Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   KNZ81_RS22590 Genome accession   NZ_CP076385
Coordinates   5126021..5127094 (-) Length   357 a.a.
NCBI ID   WP_215221071.1    Uniprot ID   -
Organism   Streptomyces sp. G11C(2021)     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5121021..5132094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNZ81_RS22575 (KNZ81_22425) rcrP 5122050..5123783 (+) 1734 WP_033948504.1 ABC transporter ATP-binding protein Regulator
  KNZ81_RS22580 (KNZ81_22430) rcrQ 5123783..5125699 (+) 1917 WP_252922975.1 ABC transporter ATP-binding protein Regulator
  KNZ81_RS22585 (KNZ81_22435) - 5125789..5126004 (+) 216 WP_037787425.1 hypothetical protein -
  KNZ81_RS22590 (KNZ81_22440) rpoS 5126021..5127094 (-) 1074 WP_215221071.1 RNA polymerase sigma factor Regulator
  KNZ81_RS22595 (KNZ81_22445) dnaG 5127301..5129205 (-) 1905 WP_033948508.1 DNA primase -
  KNZ81_RS22600 (KNZ81_22450) - 5129326..5130588 (-) 1263 WP_128463660.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38803.36 Da        Isoelectric Point: 10.2066

>NTDB_id=502330 KNZ81_RS22590 WP_215221071.1 5126021..5127094(-) (rpoS) [Streptomyces sp. G11C(2021)]
MQTRPPRPAPAAQPSALAPDVPSPRRSPQRAPAGGAGTGPQGAGGRAPAGPDQAGAAAPDLFRQYLREIGRIPLLSAADE
VELARRVEAGVFAAAKLAAGCADAGLARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRA
VEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSAEKVE
EVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEE
IGRLFGVTRERVRQIESKTLRRLREHTAAGQLRGYLE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=502330 KNZ81_RS22590 WP_215221071.1 5126021..5127094(-) (rpoS) [Streptomyces sp. G11C(2021)]
GTGCAGACCAGGCCCCCTCGCCCCGCGCCCGCCGCCCAGCCCTCGGCCCTCGCCCCGGACGTCCCCTCTCCGCGCAGGTC
GCCCCAGCGGGCCCCGGCCGGCGGAGCCGGGACCGGGCCGCAGGGCGCGGGCGGGCGGGCACCGGCAGGACCCGACCAGG
CGGGGGCGGCCGCCCCCGACCTCTTCCGGCAGTACCTCCGGGAGATCGGGCGCATCCCGCTGCTCTCGGCCGCCGACGAG
GTGGAGCTGGCCCGGCGCGTGGAGGCCGGTGTGTTCGCCGCGGCGAAGCTCGCCGCGGGCTGCGCGGACGCGGGGCTCGC
CCGGGACCTGCGGCGGCTGGTGGTGCTCGGGGAACGGGCCAAGGGGCGGCTCATCGAGGCCAACCTGCGGCTCGTCGTCT
CGGTCGCCAAGCGGTACACGGGACGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGCAACCTCGGGCTGATCCGCGCG
GTGGAGAAGTTCGACTACACCCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATACGCCAGGCGATGTCCCGCGC
CCTCGCCGACCAGGCCCGCACCATCCGGGTGCCGGTGCACGTGGTGGAGCTGATCAACCGGGTCGTGCGCACCCAGCGCG
CCCTGCTCCAGGAGGCGGGGCGTGAGCCGGCCGCCGAGGAGGTCGGCGAGCGGCTCGGGCTGAGCGCCGAGAAGGTCGAG
GAGGTGCTGCGGCTGGCCCGCGAACCCATCTCCCTGCACGCGCCGGTCGGCGGTGAGGACGACGTCTTCCTCGGCGACCT
CATCGAGGACGCCGACGCGGCCTCCCCCGCCGAGAGCGCCGCCCTGCTCCTGCTCCGCCAGCACCTCGACGCGGTCCTCG
CCACCCTCGGCGACCGCGAACGCCAGGTGGTGCAGTTGCGGTACGGGTTCGACGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGCTCTTCGGGGTCACCCGCGAACGGGTCCGCCAGATCGAGTCGAAGACGCTGCGCCGGCTCCGTGAGCACAC
GGCGGCGGGGCAGTTGCGCGGCTACCTGGAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(203-279)

Sigma-70 region 2 (Sigma70_r2)

(124-193)

Sigma-70, region 4 (Sigma70_r4)

(292-345)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(60-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.863

81.793

0.367