Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HWI62_RS11455 | Genome accession | NZ_CP064464 |
| Coordinates | 2408864..2409373 (-) | Length | 169 a.a. |
| NCBI ID | WP_001831333.1 | Uniprot ID | A0A2G7I1N0 |
| Organism | Staphylococcus epidermidis strain UMCG390 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2395146..2410886 | 2408864..2409373 | within | 0 |
Gene organization within MGE regions
Location: 2395146..2410886
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWI62_RS11355 | - | 2395146..2395880 (-) | 735 | WP_012104246.1 | Panacea domain-containing protein | - |
| HWI62_RS11360 (HWI62_11270) | - | 2395894..2396544 (-) | 651 | WP_012085746.1 | hypothetical protein | - |
| HWI62_RS11365 (HWI62_11275) | - | 2396717..2397211 (-) | 495 | WP_107362606.1 | terminase small subunit | - |
| HWI62_RS11370 (HWI62_11280) | - | 2397271..2397957 (-) | 687 | WP_002505286.1 | hypothetical protein | - |
| HWI62_RS11375 (HWI62_11285) | - | 2397977..2398510 (-) | 534 | WP_002505287.1 | hypothetical protein | - |
| HWI62_RS11380 (HWI62_11290) | - | 2398523..2398861 (-) | 339 | WP_002499985.1 | hypothetical protein | - |
| HWI62_RS11385 (HWI62_11295) | - | 2399203..2399844 (-) | 642 | WP_002505288.1 | pathogenicity island protein | - |
| HWI62_RS11390 (HWI62_11300) | - | 2399858..2400223 (-) | 366 | WP_002505289.1 | hypothetical protein | - |
| HWI62_RS11395 (HWI62_11305) | - | 2400553..2402262 (-) | 1710 | WP_002505290.1 | DUF927 domain-containing protein | - |
| HWI62_RS11400 (HWI62_11310) | - | 2402277..2403149 (-) | 873 | WP_002505291.1 | primase alpha helix C-terminal domain-containing protein | - |
| HWI62_RS11405 (HWI62_11315) | tscT | 2403238..2403549 (-) | 312 | WP_002485637.1 | type II toxin-antitoxin system toxin TscT | - |
| HWI62_RS11410 (HWI62_11320) | - | 2403533..2403760 (-) | 228 | WP_002505292.1 | hypothetical protein | - |
| HWI62_RS11415 (HWI62_11325) | - | 2403911..2404183 (-) | 273 | WP_002505293.1 | helix-turn-helix domain-containing protein | - |
| HWI62_RS11420 (HWI62_11330) | - | 2404219..2404422 (-) | 204 | WP_002445790.1 | helix-turn-helix transcriptional regulator | - |
| HWI62_RS11425 (HWI62_11335) | - | 2404557..2405348 (+) | 792 | WP_002505294.1 | helix-turn-helix domain-containing protein | - |
| HWI62_RS11430 (HWI62_11340) | - | 2405487..2406020 (+) | 534 | WP_002505295.1 | Ltp family lipoprotein | - |
| HWI62_RS11435 (HWI62_11345) | - | 2406068..2406610 (+) | 543 | WP_002505296.1 | hypothetical protein | - |
| HWI62_RS11440 (HWI62_11350) | - | 2406631..2407848 (+) | 1218 | WP_002505297.1 | site-specific integrase | - |
| HWI62_RS11445 (HWI62_11355) | - | 2407898..2408482 (+) | 585 | WP_139723331.1 | hypothetical protein | - |
| HWI62_RS11450 (HWI62_11360) | rpsR | 2408577..2408819 (-) | 243 | WP_001831354.1 | 30S ribosomal protein S18 | - |
| HWI62_RS11455 (HWI62_11365) | ssbA | 2408864..2409373 (-) | 510 | WP_001831333.1 | single-stranded DNA-binding protein | Machinery gene |
| HWI62_RS11460 (HWI62_11370) | rpsF | 2409396..2409692 (-) | 297 | WP_001831345.1 | 30S ribosomal protein S6 | - |
| HWI62_RS11465 (HWI62_11375) | - | 2410077..2410886 (+) | 810 | WP_001831342.1 | GH25 family lysozyme | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18680.20 Da Isoelectric Point: 4.9056
>NTDB_id=502106 HWI62_RS11455 WP_001831333.1 2408864..2409373(-) (ssbA) [Staphylococcus epidermidis strain UMCG390]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF
Nucleotide
Download Length: 510 bp
>NTDB_id=502106 HWI62_RS11455 WP_001831333.1 2408864..2409373(-) (ssbA) [Staphylococcus epidermidis strain UMCG390]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.607 |
100 |
0.68 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.172 |
100 |
0.568 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
62.722 |
0.379 |