Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   IUJ52_RS03075 Genome accession   NZ_CP064379
Coordinates   645964..648204 (-) Length   746 a.a.
NCBI ID   WP_081454437.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640964..653204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS03055 (IUJ52_03055) kdsB 642269..643012 (-) 744 WP_004726448.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IUJ52_RS03060 (IUJ52_03060) - 643012..643191 (-) 180 WP_004726449.1 Trm112 family protein -
  IUJ52_RS03065 (IUJ52_03065) lpxK 643172..644179 (-) 1008 WP_004726450.1 tetraacyldisaccharide 4'-kinase -
  IUJ52_RS03070 (IUJ52_03070) msbA 644183..645931 (-) 1749 WP_004726451.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  IUJ52_RS03075 (IUJ52_03075) comEC 645964..648204 (-) 2241 WP_081454437.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IUJ52_RS03080 (IUJ52_03080) - 648213..648743 (+) 531 WP_004726453.1 DUF2062 domain-containing protein -
  IUJ52_RS03085 (IUJ52_03085) lolE 648880..650124 (-) 1245 WP_004726454.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  IUJ52_RS03090 (IUJ52_03090) lolD 650125..650811 (-) 687 WP_004726455.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  IUJ52_RS03095 (IUJ52_03095) lolC 650804..652012 (-) 1209 WP_038151330.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  IUJ52_RS03100 (IUJ52_03100) - 652188..652757 (+) 570 WP_004726457.1 hypothetical protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 83119.78 Da        Isoelectric Point: 9.7194

>NTDB_id=501423 IUJ52_RS03075 WP_081454437.1 645964..648204(-) (comEC) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MTLYSNYWMLISFSLTVLSAPYWPRMPSWGFAFICLVALMGTVLVTRLRGWGGIAFAVLVIVTHGNVMRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGNEGSIVVRSINGQQLPTFRQPIVRLVAPIALHIGDQVTFSVTVKPIYGRLNETGFDIEAYYL
SQGWVARATVKPQSAFSVVSRPSWRDTLHQKIQVATQHLQAQGMILALTFGDRNGIQEDDWRALRDSGLIHLVAISGLHI
GMAFAVGYLLGSALMRIHVNALWLPWIVGLLMATVYAWLAGFTLPTQRALLMCTLNVLLTMSGWRITAVQRILLTLGALL
LVSPFAPLSMSFWLSFLAVAVVLYQLASRSSTQRGWRQLVMTQCTLVLLMTPISAMFFSGFSLSSALYNLVFIPWFSVVI
VPLLFLGLVLTSLFEQVDWIWTLIDLSFWPLSQALTLSESSWVAVSHATTFVLCAGGIGWVLRPLLSRDARIAVALLALG
MWEFNSPKDRWRIDVLDVGHGLAVLIERQQRVLLYDTGSGWPDGSYVRSLVVPLLHQRGVHQLDGLIISHMDSDHAGGLA
DAQQWLSPSWVLASQRQPQWRTCVAGQQWDWQGLRLQALWPPKTVSRAHNVHSCVLRLSDPEYGHSVLLAGDVTAVGEWL
LSRQAKDIKSDIMIVPHHGSKTSSTARFIEHVAPQVAIASLAKGNQWHLPAQDVVQRYQATGAKWLDTGEAGQITLSYRA
ETRLLSTLRQSGYPPWYRQMLRKGVE

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=501423 IUJ52_RS03075 WP_081454437.1 645964..648204(-) (comEC) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGACTCTCTATTCGAATTATTGGATGCTCATTTCGTTCTCGCTCACCGTCTTGTCTGCACCCTATTGGCCGCGGATGCC
AAGTTGGGGTTTTGCATTCATTTGCCTTGTCGCTCTGATGGGCACCGTATTAGTCACTCGGCTCAGAGGATGGGGCGGGA
TCGCGTTTGCCGTGTTAGTGATAGTAACACATGGCAACGTAATGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGAGAGGTTGACAGCTTTTTTAAGCAAATAAGTTACGGGAATGAAGGCAGTATCGTGGTGAGATC
AATTAACGGTCAACAATTGCCCACCTTTCGTCAGCCGATTGTCCGATTAGTCGCGCCCATTGCACTCCATATCGGCGATC
AGGTGACGTTTTCAGTCACGGTGAAACCGATTTATGGACGCCTCAATGAAACCGGATTTGATATAGAAGCATACTATCTC
AGCCAAGGTTGGGTTGCTCGCGCGACCGTCAAACCGCAGTCGGCGTTTTCGGTCGTCTCTCGACCCAGCTGGCGGGACAC
TTTGCACCAAAAAATCCAAGTTGCTACGCAACATCTCCAAGCACAAGGCATGATTTTGGCGCTGACGTTTGGCGACCGCA
ATGGCATTCAGGAAGATGACTGGCGCGCGCTTCGCGACAGCGGATTAATCCATTTGGTTGCGATATCTGGATTGCACATC
GGCATGGCTTTCGCTGTGGGTTATTTGTTGGGAAGCGCGTTAATGCGCATCCACGTGAACGCGCTGTGGCTGCCATGGAT
CGTCGGTCTGCTGATGGCCACGGTGTACGCGTGGTTGGCTGGATTTACCTTGCCGACACAGCGCGCGTTGCTCATGTGTA
CGCTGAATGTACTATTGACGATGAGCGGGTGGCGCATCACGGCTGTGCAGCGCATTCTGTTGACACTGGGCGCGTTGCTG
CTGGTGTCGCCATTTGCGCCGCTGTCGATGAGTTTTTGGTTGTCGTTCTTGGCCGTCGCGGTCGTGCTGTATCAACTTGC
GAGTCGTTCATCGACGCAACGTGGATGGCGACAGCTTGTCATGACGCAGTGTACGTTGGTTCTATTGATGACGCCGATCT
CTGCGATGTTTTTCTCTGGTTTTAGCCTATCGTCGGCGCTCTACAACTTGGTGTTTATTCCGTGGTTCAGTGTGGTGATT
GTGCCGCTGCTGTTCTTGGGGTTGGTCTTGACGTCGCTGTTTGAGCAAGTCGATTGGATATGGACGCTGATTGATCTCAG
CTTTTGGCCTTTGAGTCAGGCATTAACACTCTCTGAATCCAGTTGGGTGGCAGTCAGTCATGCCACCACGTTCGTGTTGT
GCGCTGGCGGGATCGGTTGGGTGCTGCGTCCATTGCTGAGTCGCGATGCCCGAATCGCTGTGGCACTACTCGCGCTTGGC
ATGTGGGAGTTCAATTCGCCCAAGGATCGCTGGCGCATTGATGTGCTTGATGTTGGCCATGGTCTGGCGGTGCTGATTGA
GCGCCAGCAGCGCGTGTTGCTCTATGACACCGGCAGTGGTTGGCCTGATGGCAGTTACGTGCGCTCACTGGTGGTGCCAC
TGCTCCATCAACGTGGCGTGCATCAACTGGATGGCTTGATTATCAGTCATATGGATAGCGATCATGCAGGCGGTTTGGCG
GATGCGCAGCAATGGTTGTCTCCGTCATGGGTATTGGCCAGTCAACGTCAACCCCAATGGCGAACGTGTGTTGCAGGGCA
ACAATGGGATTGGCAGGGGCTGAGATTACAGGCGTTGTGGCCGCCGAAAACGGTCTCGCGCGCGCACAATGTGCACTCCT
GCGTGCTGAGGCTCAGCGATCCTGAATATGGTCATTCCGTGTTGTTGGCTGGCGATGTGACGGCAGTCGGTGAGTGGTTA
CTCAGTCGCCAAGCCAAAGATATCAAGAGCGATATCATGATTGTGCCGCATCATGGTAGCAAAACTTCCTCGACCGCTCG
CTTTATCGAACACGTGGCGCCGCAGGTGGCAATCGCCTCGTTGGCCAAAGGCAATCAATGGCATCTGCCCGCTCAAGACG
TGGTTCAACGCTATCAAGCGACTGGGGCAAAGTGGCTGGATACGGGGGAGGCGGGGCAAATCACCCTCAGCTATCGCGCA
GAAACTCGTCTATTATCAACATTGCGCCAGTCAGGATATCCCCCTTGGTATAGGCAGATGCTACGTAAAGGGGTAGAATG
A

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-462)

Domain of unknown function (DUF4131) (DUF4131)

(29-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

54.509

100

0.551
  comEC Vibrio campbellii strain DS40M4

43.008

100

0.437
  comEC Vibrio parahaemolyticus RIMD 2210633

42.612

100

0.433