Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IUJ54_RS06975 Genome accession   NZ_CP064378
Coordinates   1595638..1596186 (-) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1590638..1601186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ54_RS06955 (IUJ54_06950) aroK 1591368..1591889 (-) 522 WP_027219629.1 shikimate kinase AroK -
  IUJ54_RS06960 (IUJ54_06955) pilQ 1592341..1594437 (-) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  IUJ54_RS06965 (IUJ54_06960) pilP 1594441..1595028 (-) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  IUJ54_RS06970 (IUJ54_06965) pilO 1595025..1595624 (-) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  IUJ54_RS06975 (IUJ54_06970) pilN 1595638..1596186 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  IUJ54_RS06980 (IUJ54_06975) pilM 1596190..1597254 (-) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  IUJ54_RS06985 (IUJ54_06980) ravI 1597671..1598681 (+) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=501400 IUJ54_RS06975 WP_010946663.1 1595638..1596186(-) (pilN) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=501400 IUJ54_RS06975 WP_010946663.1 1595638..1596186(-) (pilN) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGAATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTTTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995