Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IUJ54_RS06965 Genome accession   NZ_CP064378
Coordinates   1594441..1595028 (-) Length   195 a.a.
NCBI ID   WP_010946665.1    Uniprot ID   Q5ZX03
Organism   Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1589441..1600028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ54_RS06950 (IUJ54_06945) aroB 1590272..1591381 (-) 1110 WP_010946668.1 3-dehydroquinate synthase -
  IUJ54_RS06955 (IUJ54_06950) aroK 1591368..1591889 (-) 522 WP_027219629.1 shikimate kinase AroK -
  IUJ54_RS06960 (IUJ54_06955) pilQ 1592341..1594437 (-) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  IUJ54_RS06965 (IUJ54_06960) pilP 1594441..1595028 (-) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  IUJ54_RS06970 (IUJ54_06965) pilO 1595025..1595624 (-) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  IUJ54_RS06975 (IUJ54_06970) pilN 1595638..1596186 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  IUJ54_RS06980 (IUJ54_06975) pilM 1596190..1597254 (-) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  IUJ54_RS06985 (IUJ54_06980) ravI 1597671..1598681 (+) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22343.91 Da        Isoelectric Point: 10.3617

>NTDB_id=501398 IUJ54_RS06965 WP_010946665.1 1594441..1595028(-) (pilP) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
MIIKNNQTLLILGFFGNSLRTLLTSENFRKSLFTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRF
PENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRI
ILIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=501398 IUJ54_RS06965 WP_010946665.1 1594441..1595028(-) (pilP) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
ATGATAATTAAAAATAACCAGACTCTTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGCACTTTACTCACCTCAGAGAA
TTTCCGAAAAAGCCTATTCACAGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGT
ACATCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTT
CCAGAAAACGACAATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAA
AAGGCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCT
GGGCTCTGATTAAACAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATT
ATTTTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAAT
TAATTTGGATACTGGCAAGCAGGAGTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(50-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZX03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

96.923

100

0.969