Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IUJ44_RS08310 Genome accession   NZ_CP064375
Coordinates   1783514..1783924 (+) Length   136 a.a.
NCBI ID   WP_001200144.1    Uniprot ID   A0A6F8TJU0
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1778514..1788924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS08295 (IUJ44_08290) - 1779503..1781809 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IUJ44_RS08300 (IUJ44_08295) - 1781854..1782627 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  IUJ44_RS08305 (IUJ44_08300) mazG 1782739..1783545 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  IUJ44_RS08310 (IUJ44_08305) comEA 1783514..1783924 (+) 411 WP_001200144.1 ComEA family DNA-binding protein Machinery gene
  IUJ44_RS08315 (IUJ44_08310) pcnB 1784049..1785512 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  IUJ44_RS08320 (IUJ44_08315) folK 1785509..1785991 (+) 483 WP_000219224.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IUJ44_RS08325 (IUJ44_08320) panB 1786037..1786846 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IUJ44_RS08330 (IUJ44_08325) panC 1786850..1787698 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  IUJ44_RS08335 (IUJ44_08330) rapZ 1787721..1788572 (+) 852 WP_000821671.1 RNase adapter RapZ -
  IUJ44_RS08340 (IUJ44_08335) - 1788569..1788838 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15747.09 Da        Isoelectric Point: 10.4475

>NTDB_id=501332 IUJ44_RS08310 WP_001200144.1 1783514..1783924(+) (comEA) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MQYSMRFWKNKYFILIMLCLGVVSPSVYAQSFDQNFQEWKAKQQMYDQKLKITKSSHSNGSKISQTKNFNDFTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=501332 IUJ44_RS08310 WP_001200144.1 1783514..1783924(+) (comEA) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTATTTTAATAATGTTGTGCTTGGGAGTAGTTTCACCTTCAGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAAGATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTTTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TJU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

93.382

100

0.934
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404