Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IUJ44_RS03595 Genome accession   NZ_CP064375
Coordinates   787866..788684 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 782866..793684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS03580 (IUJ44_03575) pilE 783083..783508 (-) 426 WP_000788344.1 type IV pilin protein Machinery gene
  IUJ44_RS03585 (IUJ44_03580) pilY2 783505..783987 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  IUJ44_RS03590 (IUJ44_03585) pilY1 784000..787854 (-) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  IUJ44_RS03595 (IUJ44_03590) pilX 787866..788684 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IUJ44_RS03600 (IUJ44_03595) pilW 788681..789682 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  IUJ44_RS03605 (IUJ44_03600) pilV 789683..790243 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IUJ44_RS03610 (IUJ44_03605) fimU 790237..790710 (-) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  IUJ44_RS03615 (IUJ44_03610) ispH 790880..791830 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IUJ44_RS03620 (IUJ44_03615) gmk 791953..792582 (+) 630 WP_000015937.1 guanylate kinase -
  IUJ44_RS03625 (IUJ44_03620) rpoZ 792655..792933 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IUJ44_RS03630 (IUJ44_03625) - 792972..793102 (+) 131 Protein_697 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=501306 IUJ44_RS03595 WP_000149377.1 787866..788684(-) (pilX) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=501306 IUJ44_RS03595 WP_000149377.1 787866..788684(-) (pilX) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGAAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989