Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IUJ44_RS03610 Genome accession   NZ_CP064375
Coordinates   790237..790710 (-) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 785237..795710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS03595 (IUJ44_03590) pilX 787866..788684 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IUJ44_RS03600 (IUJ44_03595) pilW 788681..789682 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  IUJ44_RS03605 (IUJ44_03600) pilV 789683..790243 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IUJ44_RS03610 (IUJ44_03605) fimU 790237..790710 (-) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  IUJ44_RS03615 (IUJ44_03610) ispH 790880..791830 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IUJ44_RS03620 (IUJ44_03615) gmk 791953..792582 (+) 630 WP_000015937.1 guanylate kinase -
  IUJ44_RS03625 (IUJ44_03620) rpoZ 792655..792933 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IUJ44_RS03630 (IUJ44_03625) - 792972..793102 (+) 131 Protein_697 hypothetical protein -
  IUJ44_RS03635 (IUJ44_03630) - 793142..795247 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=501309 IUJ44_RS03610 WP_001214059.1 790237..790710(-) (fimU) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=501309 IUJ44_RS03610 WP_001214059.1 790237..790710(-) (fimU) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994