Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IUJ44_RS03605 Genome accession   NZ_CP064375
Coordinates   789683..790243 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784683..795243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS03595 (IUJ44_03590) pilX 787866..788684 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IUJ44_RS03600 (IUJ44_03595) pilW 788681..789682 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  IUJ44_RS03605 (IUJ44_03600) pilV 789683..790243 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IUJ44_RS03610 (IUJ44_03605) fimU 790237..790710 (-) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  IUJ44_RS03615 (IUJ44_03610) ispH 790880..791830 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IUJ44_RS03620 (IUJ44_03615) gmk 791953..792582 (+) 630 WP_000015937.1 guanylate kinase -
  IUJ44_RS03625 (IUJ44_03620) rpoZ 792655..792933 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IUJ44_RS03630 (IUJ44_03625) - 792972..793102 (+) 131 Protein_697 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=501308 IUJ44_RS03605 WP_002194578.1 789683..790243(-) (pilV) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=501308 IUJ44_RS03605 WP_002194578.1 789683..790243(-) (pilV) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414