Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IUJ45_RS02230 Genome accession   NZ_CP064367
Coordinates   425521..425994 (-) Length   157 a.a.
NCBI ID   WP_002249319.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420521..430994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS02210 (IUJ45_02225) yaaA 420978..421757 (-) 780 WP_002236895.1 peroxide stress protein YaaA -
  IUJ45_RS02215 (IUJ45_02230) dapC 422019..423206 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  IUJ45_RS02220 (IUJ45_02235) dut 423282..423734 (-) 453 WP_002226436.1 dUTP diphosphatase -
  IUJ45_RS02225 (IUJ45_02240) - 423877..424302 (+) 426 Protein_443 AzlC family ABC transporter permease -
  IUJ45_RS02230 (IUJ45_02245) pilX 425521..425994 (-) 474 WP_002249319.1 PilX family type IV pilin Machinery gene
  IUJ45_RS02235 (IUJ45_02250) pilK 425999..426598 (-) 600 WP_002242528.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IUJ45_RS02240 (IUJ45_02255) pilJ 426577..427551 (-) 975 WP_082308618.1 PilW family protein Machinery gene
  IUJ45_RS02245 (IUJ45_02260) pilI 427548..428156 (-) 609 WP_002242521.1 type IV pilus modification protein PilV Machinery gene
  IUJ45_RS02250 (IUJ45_02265) pilH 428188..428853 (-) 666 WP_002242526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IUJ45_RS02255 (IUJ45_02270) dnaB 429155..430561 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17293.01 Da        Isoelectric Point: 9.4513

>NTDB_id=501154 IUJ45_RS02230 WP_002249319.1 425521..425994(-) (pilX) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIERGYQSQLYTEMVGINNVLKQIILKNPQDDNDTLKIRLEALASGYKM
NPKIAKKYSVSVAFANTEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=501154 IUJ45_RS02230 WP_002249319.1 425521..425994(-) (pilX) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAGAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGATTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGATACGACTGGAAGCGCTTGCCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGCTTGGTCGG
TGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

87.898

100

0.879
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866