Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   IUJ45_RS02235 Genome accession   NZ_CP064367
Coordinates   425999..426598 (-) Length   199 a.a.
NCBI ID   WP_002242528.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420999..431598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS02215 (IUJ45_02230) dapC 422019..423206 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  IUJ45_RS02220 (IUJ45_02235) dut 423282..423734 (-) 453 WP_002226436.1 dUTP diphosphatase -
  IUJ45_RS02225 (IUJ45_02240) - 423877..424302 (+) 426 Protein_443 AzlC family ABC transporter permease -
  IUJ45_RS02230 (IUJ45_02245) pilX 425521..425994 (-) 474 WP_002249319.1 PilX family type IV pilin Machinery gene
  IUJ45_RS02235 (IUJ45_02250) pilK 425999..426598 (-) 600 WP_002242528.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IUJ45_RS02240 (IUJ45_02255) pilJ 426577..427551 (-) 975 WP_082308618.1 PilW family protein Machinery gene
  IUJ45_RS02245 (IUJ45_02260) pilI 427548..428156 (-) 609 WP_002242521.1 type IV pilus modification protein PilV Machinery gene
  IUJ45_RS02250 (IUJ45_02265) pilH 428188..428853 (-) 666 WP_002242526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IUJ45_RS02255 (IUJ45_02270) dnaB 429155..430561 (-) 1407 WP_002219448.1 replicative DNA helicase -
  IUJ45_RS02260 (IUJ45_02275) - 430724..431311 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21925.69 Da        Isoelectric Point: 5.0730

>NTDB_id=501155 IUJ45_RS02235 WP_002242528.1 425999..426598(-) (pilK) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNTNHGNEEAFDNIVVQGNPTVEAVKRSCPANSTDLCIDNKGMEYKKGTQSVSKPPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=501155 IUJ45_RS02235 WP_002242528.1 425999..426598(-) (pilK) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATCATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGCAAAGTGTCAGCAAACCACCGCGCTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.177

100

0.899