Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IS481_RS14450 Genome accession   NZ_CP064338
Coordinates   3069317..3069718 (-) Length   133 a.a.
NCBI ID   WP_104357852.1    Uniprot ID   A0A2S5T3T6
Organism   Caldimonas thermodepolymerans strain DSM 15344     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064317..3074718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS481_RS14435 (IS481_14435) - 3065887..3068205 (-) 2319 WP_419186854.1 methyl-accepting chemotaxis protein -
  IS481_RS14440 (IS481_14440) - 3068241..3068780 (-) 540 WP_104357854.1 chemotaxis protein CheW -
  IS481_RS14445 (IS481_14445) - 3068852..3069217 (-) 366 WP_104357853.1 response regulator transcription factor -
  IS481_RS14450 (IS481_14450) pilG 3069317..3069718 (-) 402 WP_104357852.1 response regulator Regulator
  IS481_RS14455 (IS481_14455) - 3069761..3069913 (-) 153 WP_104357851.1 rubredoxin -
  IS481_RS14460 (IS481_14460) thiD 3070071..3070994 (+) 924 WP_232529310.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IS481_RS14465 (IS481_14465) hemL 3070984..3072270 (+) 1287 WP_104357849.1 glutamate-1-semialdehyde 2,1-aminomutase -
  IS481_RS14470 (IS481_14470) mpl 3072318..3073685 (+) 1368 WP_104357848.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14749.80 Da        Isoelectric Point: 5.1826

>NTDB_id=500854 IS481_RS14450 WP_104357852.1 3069317..3069718(-) (pilG) [Caldimonas thermodepolymerans strain DSM 15344]
MSDNATNAGATTKVLVIDDSNTIRRSAEIFLKQGGYQVVLAEDGFDALAKVNDHEPDLIFCDILMPRLDGYQTCAIIKRN
PKFSQVPVIMLSSKDGLFDKARGRMVGSEDYLTKPFTKDQLLQAVEQYSSRAT

Nucleotide


Download         Length: 402 bp        

>NTDB_id=500854 IS481_RS14450 WP_104357852.1 3069317..3069718(-) (pilG) [Caldimonas thermodepolymerans strain DSM 15344]
GTGAGCGATAACGCGACGAACGCAGGCGCCACCACGAAGGTGCTGGTGATCGACGACAGCAACACGATACGTCGCAGTGC
CGAAATCTTTCTGAAGCAAGGTGGATACCAGGTGGTGCTGGCCGAGGACGGCTTCGACGCACTGGCCAAGGTCAACGACC
ATGAGCCCGACCTGATCTTCTGCGACATCCTGATGCCCCGTCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAAC
CCCAAATTCTCCCAGGTCCCGGTGATCATGCTGTCGTCCAAGGACGGCCTGTTCGACAAGGCCCGTGGGCGCATGGTGGG
CTCCGAGGACTACCTGACCAAGCCGTTCACCAAGGATCAACTGCTCCAGGCCGTGGAGCAATACAGCAGTCGGGCGACTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S5T3T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.017

88.722

0.541
  pilH Synechocystis sp. PCC 6803

42.982

85.714

0.368
  vicR Streptococcus mutans UA159

40.336

89.474

0.361