Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IS507_RS17420 Genome accession   NZ_CP064194
Coordinates   3590105..3590923 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain X4-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3585105..3595923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS507_RS17405 pilE 3585322..3585747 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  IS507_RS17410 pilY2 3585744..3586226 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  IS507_RS17415 pilY1 3586239..3590093 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  IS507_RS17420 pilX 3590105..3590923 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IS507_RS17425 pilW 3590920..3591921 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  IS507_RS17430 pilV 3591922..3592482 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  IS507_RS17435 fimU 3592476..3592949 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  IS507_RS17440 ispH 3593119..3594069 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IS507_RS17445 gmk 3594192..3594821 (+) 630 WP_000015937.1 guanylate kinase -
  IS507_RS17450 rpoZ 3594894..3595172 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IS507_RS17455 - 3595211..3595340 (+) 130 Protein_3391 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=500064 IS507_RS17420 WP_000149374.1 3590105..3590923(-) (pilX) [Acinetobacter baumannii strain X4-65]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=500064 IS507_RS17420 WP_000149374.1 3590105..3590923(-) (pilX) [Acinetobacter baumannii strain X4-65]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993