Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KKZ13_RS08560 Genome accession   NZ_CP075737
Coordinates   1793060..1793797 (+) Length   245 a.a.
NCBI ID   WP_089075289.1    Uniprot ID   -
Organism   Escherichia coli strain CPF6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788060..1798797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ13_RS08545 (KKZ13_08515) clpC 1788514..1791087 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KKZ13_RS08550 (KKZ13_08520) yfiH 1791217..1791948 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  KKZ13_RS08555 (KKZ13_08525) rluD 1791945..1792925 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KKZ13_RS08560 (KKZ13_08530) comL 1793060..1793797 (+) 738 WP_089075289.1 outer membrane protein assembly factor BamD Machinery gene
  KKZ13_RS08565 (KKZ13_08535) raiA 1794068..1794409 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KKZ13_RS08570 (KKZ13_08540) pheL 1794513..1794560 (+) 48 WP_010723158.1 phe operon leader peptide -
  KKZ13_RS08575 (KKZ13_08545) pheA 1794659..1795819 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  KKZ13_RS08580 (KKZ13_08550) tyrA 1795862..1796983 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KKZ13_RS08585 (KKZ13_08555) aroF 1796994..1798064 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KKZ13_RS08590 (KKZ13_08560) yfiL 1798274..1798639 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27841.45 Da        Isoelectric Point: 6.4874

>NTDB_id=500063 KKZ13_RS08560 WP_089075289.1 1793060..1793797(+) (comL) [Escherichia coli strain CPF6]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPIHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=500063 KKZ13_RS08560 WP_089075289.1 1793060..1793797(+) (comL) [Escherichia coli strain CPF6]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGATCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376