Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IS507_RS17435 Genome accession   NZ_CP064194
Coordinates   3592476..3592949 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain X4-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3587476..3597949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS507_RS17420 pilX 3590105..3590923 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IS507_RS17425 pilW 3590920..3591921 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  IS507_RS17430 pilV 3591922..3592482 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  IS507_RS17435 fimU 3592476..3592949 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  IS507_RS17440 ispH 3593119..3594069 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IS507_RS17445 gmk 3594192..3594821 (+) 630 WP_000015937.1 guanylate kinase -
  IS507_RS17450 rpoZ 3594894..3595172 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IS507_RS17455 - 3595211..3595340 (+) 130 Protein_3391 hypothetical protein -
  IS507_RS17460 - 3595380..3597485 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=500067 IS507_RS17435 WP_001214061.1 3592476..3592949(-) (fimU) [Acinetobacter baumannii strain X4-65]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=500067 IS507_RS17435 WP_001214061.1 3592476..3592949(-) (fimU) [Acinetobacter baumannii strain X4-65]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987