Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KKZ08_RS27870 Genome accession   NZ_CP075691
Coordinates   6146389..6148023 (+) Length   544 a.a.
NCBI ID   WP_223777040.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6141389..6153023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS27835 lepB 6141540..6142259 (+) 720 WP_223777034.1 signal peptidase I -
  KKZ08_RS27840 lepB 6142252..6143337 (+) 1086 WP_223777035.1 signal peptidase I -
  KKZ08_RS27845 lepB 6143222..6144184 (+) 963 WP_223777036.1 signal peptidase I -
  KKZ08_RS27850 lepB 6144265..6145020 (+) 756 WP_223777037.1 signal peptidase I -
  KKZ08_RS27855 - 6145010..6145537 (+) 528 WP_223777038.1 NUDIX hydrolase -
  KKZ08_RS27860 - 6145593..6145901 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  KKZ08_RS27865 - 6146009..6146389 (+) 381 WP_223777039.1 YraN family protein -
  KKZ08_RS27870 comM 6146389..6148023 (+) 1635 WP_223777040.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KKZ08_RS27875 dprA 6148020..6149180 (+) 1161 WP_223777041.1 DNA-processing protein DprA -
  KKZ08_RS27880 whiG 6149526..6150368 (+) 843 WP_223777042.1 RNA polymerase sigma factor WhiG -
  KKZ08_RS27885 - 6150487..6151044 (+) 558 WP_223777043.1 TetR/AcrR family transcriptional regulator -
  KKZ08_RS27890 - 6150998..6151651 (-) 654 WP_223777044.1 M23 family metallopeptidase -
  KKZ08_RS27895 rpsB 6152009..6152932 (+) 924 WP_223777045.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 544 a.a.        Molecular weight: 56208.59 Da        Isoelectric Point: 6.1437

>NTDB_id=499710 KKZ08_RS27870 WP_223777040.1 6146389..6148023(+) (comM) [Streptomyces sp. 135]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGVLPAVLAAADAGYEQVVVPECTAAEAALVPGVSVLGVRS
LRQLIAVLTDEPVPLEEPDETGRPDPMLAGLCVPGTGVGTGLGVGGAMDDAHALDLADVVGQTSARTAVEVAAAGAHHLF
LQGPPGAGKTMLAERLPAILPRLTREDSLEVTAVHSVAGMLPPGKPLVDIAPYCAPHHSATMQSLVGGGQGLARPGAVSL
AHRGVLFLDEAPEFSSQALDSLRQPLESGHVVIARSAGVVRLPAKFLMVLAANPCPCGRHTLLGDGCECPSSVIRRYQAR
LSGPLLDRVDLKVEVEAVTRSELAGYGTPGESTRTVADRVRAARERAAARLSGTGWRTNSEVPGHALRTRWPAASGALDA
AELDLERGFLTARGLDRVLRVAWTVADLAGHDRPSAQDVALALQLRTGIARGVPMAIEPIGAPR

Nucleotide


Download         Length: 1635 bp        

>NTDB_id=499710 KKZ08_RS27870 WP_223777040.1 6146389..6148023(+) (comM) [Streptomyces sp. 135]
ATGGGATTCGCGCGTACGTGTTCGGTGGCGCTGGTCGGCGTCGAAGGCGTGGTCGTCGAGGTGCAGGCCGATCTGGAGCC
CGGCGTGGCGGCGTTCACGCTGGTGGGGCTGCCGGACAAGAGCCTGACGGAGAGCCGGGACCGCGTCAGGGCGGCCGTGG
TCAACTCGGGCGCGGAGTGGCCCCAGAAGAAGCTGACGGTGGGACTGAGCCCCGCGTCGGTCCCCAAGGGCGGCAGCGGG
TTCGACCTCGCCGTCGCGTGCGCGGTCCTCGGGGCGGCCGAGCGGATCGACCCACGGGTGCTGGCCGACATCGTGATGAT
CGGTGAGCTCGGGCTCGACGGACGGGTGCGACCCGTCCGGGGCGTGCTGCCGGCGGTCCTCGCGGCGGCCGACGCGGGGT
ACGAACAGGTGGTGGTGCCGGAGTGCACGGCAGCCGAGGCCGCGCTGGTGCCGGGCGTCTCGGTCCTCGGGGTGCGCAGC
CTGCGGCAGCTCATCGCGGTCCTCACCGACGAGCCGGTGCCGCTGGAGGAGCCGGACGAGACGGGGCGCCCCGACCCGAT
GCTCGCCGGGCTCTGTGTGCCGGGCACCGGTGTGGGCACGGGCCTCGGCGTCGGCGGCGCGATGGACGATGCCCACGCGC
TGGACCTGGCGGATGTCGTCGGGCAGACGTCGGCGAGGACCGCGGTGGAGGTGGCCGCCGCGGGGGCGCACCACCTCTTC
CTCCAGGGGCCGCCGGGCGCGGGCAAGACCATGCTCGCGGAGCGGTTGCCGGCGATCCTGCCCCGGCTGACCCGCGAGGA
CTCCTTGGAGGTGACGGCGGTCCACTCGGTGGCGGGCATGCTCCCGCCGGGCAAGCCGCTGGTGGACATCGCGCCGTACT
GCGCGCCGCACCACTCCGCGACGATGCAGTCGCTCGTGGGCGGCGGTCAGGGGCTGGCGCGGCCGGGAGCGGTCTCGTTG
GCTCACCGCGGGGTGCTCTTTCTGGACGAGGCGCCGGAATTCAGCAGCCAGGCCCTGGACTCCTTGCGGCAGCCTCTCGA
ATCGGGCCATGTGGTCATCGCGCGGAGCGCCGGGGTGGTGCGGCTGCCGGCGAAGTTCCTGATGGTGCTGGCGGCCAACC
CCTGCCCCTGCGGGCGGCACACGCTGCTCGGTGACGGGTGCGAGTGCCCCTCCTCCGTCATCCGCCGCTATCAGGCGCGC
CTCTCGGGGCCGCTGCTCGACCGGGTGGACCTGAAGGTCGAGGTGGAGGCCGTCACCCGCTCCGAACTGGCCGGGTACGG
CACGCCGGGGGAATCCACCCGGACCGTCGCCGACCGCGTCCGCGCCGCTCGGGAGAGAGCGGCCGCCAGGCTGTCCGGCA
CCGGATGGCGGACCAACAGCGAGGTGCCGGGGCATGCGTTGCGCACCCGGTGGCCCGCCGCCTCCGGAGCGCTGGACGCG
GCCGAGCTGGACCTGGAGCGCGGCTTCCTGACTGCCCGCGGCCTCGACCGCGTCCTGCGGGTGGCGTGGACCGTCGCCGA
CCTGGCGGGGCACGACCGGCCCTCCGCGCAGGACGTCGCCCTGGCGCTGCAACTGCGCACGGGAATCGCGCGCGGCGTGC
CGATGGCGATCGAGCCGATCGGAGCCCCGAGGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.304

96.691

0.39
  comM Vibrio cholerae strain A1552

40.304

96.691

0.39
  comM Vibrio campbellii strain DS40M4

39.734

96.691

0.384
  comM Haemophilus influenzae Rd KW20

37.051

97.243

0.36