Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IRJ28_RS21030 Genome accession   NZ_CP064096
Coordinates   4007617..4007736 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain N1142-3at     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 4002617..4012736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS21010 pbpG 4002973..4005048 (-) 2076 WP_003227540.1 transglycosylase domain-containing protein -
  IRJ28_RS21015 speE 4005250..4006080 (+) 831 WP_003227543.1 spermidine synthase -
  IRJ28_RS21020 speB 4006141..4007013 (+) 873 WP_003227545.1 agmatinase -
  IRJ28_RS21025 ywhH 4007045..4007518 (-) 474 WP_003227547.1 YbaK/EbsC family protein -
  IRJ28_RS21030 phrF 4007617..4007736 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  IRJ28_RS21035 rapF 4007720..4008865 (-) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  IRJ28_RS22165 - 4008868..4009098 (+) 231 WP_009968328.1 hypothetical protein -
  IRJ28_RS21040 ywhK 4009095..4010450 (+) 1356 WP_003227552.1 YncE family protein -
  IRJ28_RS21045 ywhL 4010489..4011865 (+) 1377 WP_003244415.1 YncE family protein -
  IRJ28_RS21050 albG 4011871..4012572 (-) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=499514 IRJ28_RS21030 WP_009968329.1 4007617..4007736(-) (phrF) [Bacillus subtilis strain N1142-3at]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=499514 IRJ28_RS21030 WP_009968329.1 4007617..4007736(-) (phrF) [Bacillus subtilis strain N1142-3at]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487