Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IRJ27_RS14880 Genome accession   NZ_CP064095
Coordinates   2921525..2922169 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1303-2Ay     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2916525..2927169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS14850 - 2916913..2917281 (-) 369 WP_003243784.1 hypothetical protein -
  IRJ27_RS14855 - 2917395..2917520 (-) 126 WP_003228793.1 hypothetical protein -
  IRJ27_RS14860 degQ 2917742..2917882 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  IRJ27_RS14865 comQ 2918067..2918966 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  IRJ27_RS14870 comX 2918954..2919121 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  IRJ27_RS14875 comP 2919136..2921444 (+) 2309 Protein_2888 two-component system sensor histidine kinase ComP -
  IRJ27_RS14880 comA 2921525..2922169 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  IRJ27_RS14885 yuxO 2922188..2922568 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  IRJ27_RS14890 mnhG 2922607..2922981 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  IRJ27_RS14895 mrpF 2922965..2923249 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  IRJ27_RS14900 mrpE 2923249..2923725 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  IRJ27_RS14905 mrpD 2923731..2925212 (-) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  IRJ27_RS14910 mrpC 2925205..2925546 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  IRJ27_RS14915 mrpB 2925546..2925977 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=499412 IRJ27_RS14880 WP_003220716.1 2921525..2922169(+) (comA) [Bacillus subtilis strain N1303-2Ay]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=499412 IRJ27_RS14880 WP_003220716.1 2921525..2922169(+) (comA) [Bacillus subtilis strain N1303-2Ay]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1