Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IRJ26_RS12680 Genome accession   NZ_CP064094
Coordinates   2432677..2433321 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1108-5at     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2427677..2438321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS12650 - 2428065..2428433 (-) 369 WP_003243784.1 hypothetical protein -
  IRJ26_RS12655 - 2428547..2428672 (-) 126 WP_003228793.1 hypothetical protein -
  IRJ26_RS12660 degQ 2428894..2429034 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  IRJ26_RS12665 comQ 2429219..2430118 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  IRJ26_RS12670 comX 2430106..2430273 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  IRJ26_RS12675 comP 2430288..2432596 (+) 2309 Protein_2445 two-component system sensor histidine kinase ComP -
  IRJ26_RS12680 comA 2432677..2433321 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  IRJ26_RS12685 yuxO 2433340..2433720 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  IRJ26_RS12690 mnhG 2433759..2434133 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  IRJ26_RS12695 mrpF 2434117..2434401 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  IRJ26_RS12700 mrpE 2434401..2434877 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  IRJ26_RS12705 mrpD 2434883..2436364 (-) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  IRJ26_RS12710 mrpC 2436357..2436698 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  IRJ26_RS12715 mrpB 2436698..2437129 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=499320 IRJ26_RS12680 WP_003220716.1 2432677..2433321(+) (comA) [Bacillus subtilis strain N1108-5at]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=499320 IRJ26_RS12680 WP_003220716.1 2432677..2433321(+) (comA) [Bacillus subtilis strain N1108-5at]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1