Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IRJ26_RS09655 Genome accession   NZ_CP064094
Coordinates   1838850..1838969 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain N1108-5at     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833850..1843969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS09635 pbpG 1834206..1836281 (-) 2076 WP_003227540.1 transglycosylase domain-containing protein -
  IRJ26_RS09640 speE 1836483..1837313 (+) 831 WP_003227543.1 spermidine synthase -
  IRJ26_RS09645 speB 1837374..1838246 (+) 873 WP_003227545.1 agmatinase -
  IRJ26_RS09650 ywhH 1838278..1838751 (-) 474 WP_003227547.1 YbaK/EbsC family protein -
  IRJ26_RS09655 phrF 1838850..1838969 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  IRJ26_RS09660 rapF 1838953..1840098 (-) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  IRJ26_RS09665 - 1840101..1840331 (+) 231 WP_009968328.1 hypothetical protein -
  IRJ26_RS09670 ywhK 1840328..1841683 (+) 1356 WP_003227552.1 YncE family protein -
  IRJ26_RS09675 ywhL 1841722..1843098 (+) 1377 WP_003244415.1 YncE family protein -
  IRJ26_RS09680 albG 1843104..1843805 (-) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=499306 IRJ26_RS09655 WP_009968329.1 1838850..1838969(-) (phrF) [Bacillus subtilis strain N1108-5at]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=499306 IRJ26_RS09655 WP_009968329.1 1838850..1838969(-) (phrF) [Bacillus subtilis strain N1108-5at]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487