Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   IRJ17_RS12835 Genome accession   NZ_CP064090
Coordinates   2718593..2718871 (-) Length   92 a.a.
NCBI ID   WP_122964007.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain B3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713593..2723871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ17_RS12805 - 2713938..2715143 (+) 1206 WP_122964004.1 PLP-dependent aminotransferase family protein -
  IRJ17_RS12810 - 2715224..2716045 (-) 822 WP_122964005.1 alpha/beta hydrolase -
  IRJ17_RS12815 - 2716252..2717100 (-) 849 WP_063228109.1 family 1 encapsulin nanocompartment shell protein -
  IRJ17_RS12820 - 2717137..2717745 (-) 609 WP_122964006.1 IMEF encapsulin system ferritin-like cargo protein -
  IRJ17_RS12825 - 2718064..2718345 (+) 282 WP_005828113.1 DUF2325 domain-containing protein -
  IRJ17_RS12830 - 2718408..2718554 (+) 147 WP_173596902.1 hypothetical protein -
  IRJ17_RS12835 htrA 2718593..2718871 (-) 279 WP_122964007.1 trypsin-like peptidase domain-containing protein Regulator
  IRJ17_RS12840 - 2718883..2720331 (-) 1449 WP_242774946.1 recombinase family protein -
  IRJ17_RS12845 - 2720468..2720788 (-) 321 WP_005828119.1 helix-turn-helix domain-containing protein -
  IRJ17_RS12850 - 2721028..2722146 (+) 1119 WP_122964009.1 YheC/YheD family protein -
  IRJ17_RS12855 - 2722225..2722650 (-) 426 Protein_2470 trypsin-like peptidase domain-containing protein -
  IRJ17_RS12860 - 2722935..2723474 (+) 540 WP_122964010.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 9833.27 Da        Isoelectric Point: 6.1944

>NTDB_id=499013 IRJ17_RS12835 WP_122964007.1 2718593..2718871(-) (htrA) [Brevibacillus parabrevis strain B3]
MYTGGSPLGLENSVTAGIISAKNRRLQVAKRMYEEIFQTDAAINPGNSGGPLINLNGEVVGLNAFIIQSSQCLGFAIGID
ALKTQLEQYVFK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=499013 IRJ17_RS12835 WP_122964007.1 2718593..2718871(-) (htrA) [Brevibacillus parabrevis strain B3]
ATGTACACAGGCGGTTCCCCGCTTGGGTTGGAAAACTCTGTAACGGCCGGAATTATCAGCGCCAAAAACCGTCGCCTCCA
GGTGGCAAAACGAATGTATGAAGAGATTTTCCAAACCGATGCCGCCATCAACCCCGGCAACAGTGGTGGGCCACTTATCA
ATCTGAATGGCGAGGTCGTGGGGCTGAACGCCTTTATCATCCAGTCCAGCCAATGCCTGGGCTTTGCCATCGGGATTGAC
GCACTGAAAACGCAGCTTGAGCAGTATGTTTTCAAATAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(4-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

44.118

100

0.489
  htrA Streptococcus pneumoniae Rx1

48.81

91.304

0.446
  htrA Streptococcus pneumoniae D39

48.81

91.304

0.446
  htrA Streptococcus mitis NCTC 12261

48.81

91.304

0.446
  htrA Streptococcus pneumoniae TIGR4

48.81

91.304

0.446
  htrA Streptococcus pneumoniae R6

48.81

91.304

0.446
  htrA Streptococcus gordonii str. Challis substr. CH1

41.237

100

0.435