Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   IRJ17_RS07785 Genome accession   NZ_CP064090
Coordinates   1628091..1628801 (-) Length   236 a.a.
NCBI ID   WP_242774100.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain B3     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623091..1633801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ17_RS07760 - 1624337..1624847 (+) 511 Protein_1451 DoxX family protein -
  IRJ17_RS07765 - 1624866..1625207 (+) 342 WP_173599417.1 metalloregulator ArsR/SmtB family transcription factor -
  IRJ17_RS07770 - 1625204..1625623 (+) 420 WP_242774094.1 SRPBCC domain-containing protein -
  IRJ17_RS07775 - 1625912..1626505 (+) 594 WP_173599415.1 YdeI family protein -
  IRJ17_RS07780 - 1626685..1628088 (-) 1404 WP_242774097.1 HAMP domain-containing sensor histidine kinase -
  IRJ17_RS07785 scnR 1628091..1628801 (-) 711 WP_242774100.1 response regulator transcription factor Regulator
  IRJ17_RS07790 - 1628955..1629866 (+) 912 WP_242774103.1 ABC transporter ATP-binding protein -
  IRJ17_RS07795 - 1629863..1630621 (+) 759 WP_242774105.1 ABC transporter permease -
  IRJ17_RS07800 - 1630633..1631364 (+) 732 WP_242774107.1 ABC transporter permease -
  IRJ17_RS07805 - 1631453..1632286 (+) 834 WP_242774109.1 alpha/beta hydrolase -
  IRJ17_RS07810 - 1632396..1632830 (-) 435 WP_242774111.1 hypothetical protein -
  IRJ17_RS07815 - 1632966..1633601 (-) 636 WP_242774113.1 RDD family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26989.34 Da        Isoelectric Point: 6.4989

>NTDB_id=499007 IRJ17_RS07785 WP_242774100.1 1628091..1628801(-) (scnR) [Brevibacillus parabrevis strain B3]
MDELKQKKLLIVDDEPEIRKMVEHFLRKEGFMRIYHAGDCREALELCRSIQPDLAILDVMLPDGDGFSLLQAIRHISNLP
VLFLSAKGQDEDRILGLGLGADDYIVKPFLPRELVLRLTAILRRVYIPHTPEKRPVFQLDDRLIDLEAGTIRHGGTNIPL
TAKEIALLGKFYENHNRIVTSDALCQAAWGDDYYGYENTLMVHIRRIREKIEANPSQPAHLLTVRGLGYKLIVKEE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=499007 IRJ17_RS07785 WP_242774100.1 1628091..1628801(-) (scnR) [Brevibacillus parabrevis strain B3]
ATGGACGAACTGAAACAGAAAAAGCTGCTTATCGTCGACGATGAGCCTGAAATCCGAAAAATGGTCGAGCATTTTTTGCG
CAAAGAAGGATTCATGCGCATTTACCATGCGGGCGATTGCAGAGAAGCGCTGGAGCTTTGTCGTTCCATCCAGCCTGACC
TCGCCATTCTTGATGTCATGCTGCCGGATGGCGACGGCTTTTCCTTGCTGCAAGCGATCCGGCATATTTCGAACTTGCCC
GTGCTATTTTTGTCTGCCAAAGGACAGGATGAAGACCGAATCCTCGGCCTCGGACTGGGCGCGGATGATTACATCGTGAA
ACCGTTTTTGCCACGGGAGCTTGTCTTGCGGCTGACGGCTATTTTGCGCAGAGTGTACATTCCCCACACGCCGGAAAAAC
GCCCTGTTTTTCAACTGGACGACCGTCTCATTGACTTGGAGGCTGGCACCATTCGCCATGGCGGAACAAATATCCCGCTG
ACCGCAAAAGAAATCGCTCTGCTCGGCAAGTTTTATGAGAACCACAATCGCATCGTCACGAGCGACGCGCTCTGTCAGGC
CGCATGGGGCGACGACTATTACGGCTATGAAAATACGCTGATGGTGCACATTCGGCGCATTCGGGAAAAAATCGAAGCGA
ATCCTTCCCAGCCCGCTCATTTGCTGACCGTGCGCGGACTCGGCTACAAGCTGATCGTAAAGGAGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.402

97.034

0.508
  micA Streptococcus pneumoniae Cp1015

41.304

97.458

0.403
  vicR Streptococcus mutans UA159

40.26

97.881

0.394