Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   IRB21_RS17815 Genome accession   NZ_CP064089
Coordinates   3394911..3395051 (-) Length   46 a.a.
NCBI ID   WP_003213123.1    Uniprot ID   A0A5K1N966
Organism   Bacillus altitudinis strain N435-3     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3389911..3400051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS17790 - 3390233..3390622 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  IRB21_RS17795 comA 3390646..3391287 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  IRB21_RS17800 comP 3391368..3393674 (-) 2307 WP_017367961.1 ATP-binding protein Regulator
  IRB21_RS17805 comX 3393688..3393858 (-) 171 WP_008345861.1 competence pheromone ComX -
  IRB21_RS17810 - 3393836..3394759 (-) 924 WP_341275289.1 polyprenyl synthetase family protein -
  IRB21_RS17815 degQ 3394911..3395051 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  IRB21_RS17820 - 3395557..3395910 (+) 354 WP_019744042.1 hypothetical protein -
  IRB21_RS17825 - 3395947..3397173 (-) 1227 WP_035701209.1 HDOD domain-containing protein -
  IRB21_RS17830 - 3397314..3398723 (-) 1410 WP_230677047.1 nicotinate phosphoribosyltransferase -
  IRB21_RS17835 - 3398801..3399352 (-) 552 WP_008345872.1 isochorismatase family cysteine hydrolase -
  IRB21_RS17840 - 3399413..3399820 (-) 408 WP_007500468.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5677.42 Da        Isoelectric Point: 4.6828

>NTDB_id=498983 IRB21_RS17815 WP_003213123.1 3394911..3395051(-) (degQ) [Bacillus altitudinis strain N435-3]
MEKYEIEELKQLLWKLENEIRETTASLHNINKSIDQYDKYEYVKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=498983 IRB21_RS17815 WP_003213123.1 3394911..3395051(-) (degQ) [Bacillus altitudinis strain N435-3]
ATGGAAAAGTATGAAATCGAAGAACTTAAACAACTATTATGGAAACTTGAAAACGAAATTAGAGAAACAACGGCTTCTCT
TCATAACATTAACAAAAGCATTGATCAATACGACAAATATGAATATGTGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N966

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.696