Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IRB21_RS17795 Genome accession   NZ_CP064089
Coordinates   3390646..3391287 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain N435-3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3385646..3396287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS17760 - 3386774..3387205 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  IRB21_RS17765 - 3387205..3387546 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  IRB21_RS17770 - 3387539..3389017 (+) 1479 WP_058336867.1 Na+/H+ antiporter subunit D -
  IRB21_RS17775 - 3389024..3389503 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  IRB21_RS17780 - 3389503..3389784 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  IRB21_RS17785 mnhG 3389768..3390142 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  IRB21_RS17790 - 3390233..3390622 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  IRB21_RS17795 comA 3390646..3391287 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  IRB21_RS17800 comP 3391368..3393674 (-) 2307 WP_017367961.1 ATP-binding protein Regulator
  IRB21_RS17805 comX 3393688..3393858 (-) 171 WP_008345861.1 competence pheromone ComX -
  IRB21_RS17810 - 3393836..3394759 (-) 924 WP_341275289.1 polyprenyl synthetase family protein -
  IRB21_RS17815 degQ 3394911..3395051 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  IRB21_RS17820 - 3395557..3395910 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=498981 IRB21_RS17795 WP_007500477.1 3390646..3391287(-) (comA) [Bacillus altitudinis strain N435-3]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=498981 IRB21_RS17795 WP_007500477.1 3390646..3391287(-) (comA) [Bacillus altitudinis strain N435-3]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718