Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KHS93_RS16815 Genome accession   NZ_CP075547
Coordinates   3410684..3412669 (-) Length   661 a.a.
NCBI ID   WP_003151439.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3405684..3417669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS16795 (KHS93_16795) - 3405868..3406965 (-) 1098 WP_003151446.1 DUF4097 domain-containing protein -
  KHS93_RS16800 (KHS93_16800) - 3406990..3407316 (-) 327 WP_003151444.1 hypothetical protein -
  KHS93_RS16805 (KHS93_16805) - 3407515..3407754 (+) 240 WP_003151443.1 hypothetical protein -
  KHS93_RS16810 (KHS93_16810) uvrA 3407803..3410676 (-) 2874 WP_003151441.1 excinuclease ABC subunit UvrA Machinery gene
  KHS93_RS16815 (KHS93_16815) uvrB 3410684..3412669 (-) 1986 WP_003151439.1 excinuclease ABC subunit UvrB Machinery gene
  KHS93_RS16820 (KHS93_16820) - 3412845..3413081 (-) 237 WP_003151438.1 CsbA family protein -
  KHS93_RS16825 (KHS93_16825) - 3413382..3415883 (+) 2502 WP_060387186.1 PEP/pyruvate-binding domain-containing protein -
  KHS93_RS16830 (KHS93_16830) - 3415955..3416578 (+) 624 WP_003151436.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76447.20 Da        Isoelectric Point: 5.1906

>NTDB_id=498872 KHS93_RS16815 WP_003151439.1 3410684..3412669(-) (uvrB) [Bacillus amyloliquefaciens strain SN16-1]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITNSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=498872 KHS93_RS16815 WP_003151439.1 3410684..3412669(-) (uvrB) [Bacillus amyloliquefaciens strain SN16-1]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
CATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGTGCGACAGGGACGGGCAAAACCTTTACCGTGTCCAATCTGATTA
AAGAAGTGAACAAACCGACACTGGTCATTGCCCATAACAAAACCCTTGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTCCCGAACAACGCTGTCGAGTATTTTGTCAGCTATTACGATTACTATCAGCCGGAGGCGTACGTGCCTCAAACGGATAC
TTTTATAGAGAAAGACGCAAGCATTAATGATGAAATTGATAAGCTGAGACACTCCGCGACATCCTCTCTGTTTGAACGGA
GAGATGTCATCATTATCGCGAGTGTGTCATGCATATACGGCCTCGGTTCGCCTGAAGAATACCGGGAAATGGTCGTGTCG
CTCAGACCGGAAATGGAGATTGAGCGGAACGAGCTGCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGCGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTTCCGGCTTCCCGTGACGAACATTGTATCAGAG
TGGAATTTTTCGGAGACGAAATTGAGCGGATCAGGGAGGTCGACGCTTTGACCGGAGAAATTCTCGGCGACCGTGACCAT
GTCGCGATTTTCCCGGCTTCCCACTTCGTCACCCGGGCGGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTGAAAGTGATGCACGAAAACGGCAAGCTCCTTGAAGCGCAGCGGCTTGAGCAGCGGACGAGATATGATC
TTGAAATGATGCGGGAAATGGGTTTTTGCTCAGGGATCGAGAACTATTCAAGACATTTGACGCTCCGTCCGCCGGGCTCT
ACGCCGTATACGCTGCTTGATTATTTTCCGGACGATTTTATGATTGTCGTTGATGAATCACATGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCGAGAAAACAGGTGCTTGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTCCGATTCGAGGAATTTGAAAAGCATATGCACAATATCGTGTACGTGTCGGCGACTCCGGGACCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGACCGACGGGACTCCTCGATCCCCTCATTGACGTCCGTCCGAT
CGAAGGACAGATTGATGATCTGATCGGCGAGATTCAGGCGAGGATTGAACGGAATGAACGCGTTCTCGTGACGACTTTAA
CGAAAAAAATGTCAGAGGATCTGACCGATTATCTCAAGGAAATCGGCATCAAGGTCAATTATCTGCATTCCGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGACCTCCGCCTCGGAAAACATGATGTGTTAATCGGCATCAACCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTCGATGCGGATAAAGAAGGCTTCCTCCGTTCTGAACGTTCGC
TGATTCAGACGATCGGACGGGCGGCACGAAACGCGGAAGGCCGCGTCATCATGTATGCCGATAAAATCACGAATTCGATG
GAGATCGCAATTAATGAAACGAAGCGCCGACGGGAACAGCAGGAGCGCTTTAACGAAATTCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCGC
CTAAACTGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAGCGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTTAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

UvrB/uvrC motif (UVR)

(626-659)

Ultra-violet resistance protein B (UvrB)

(551-593)

Type III restriction enzyme, res subunit (ResIII)

(12-130)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae R6

70.32

99.395

0.699
  uvrB Streptococcus pneumoniae D39

70.32

99.395

0.699