Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ISP08_RS12475 Genome accession   NZ_CP064056
Coordinates   2502712..2503224 (-) Length   170 a.a.
NCBI ID   WP_048793677.1    Uniprot ID   A0A7T1AZR9
Organism   Staphylococcus lloydii strain 23_2_7_LY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2497712..2508224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISP08_RS12440 (ISP08_12430) - 2498526..2498768 (-) 243 WP_195718850.1 hypothetical protein -
  ISP08_RS12445 (ISP08_12435) - 2498843..2499493 (-) 651 WP_195718851.1 hypothetical protein -
  ISP08_RS12450 (ISP08_12440) - 2499759..2499851 (-) 93 WP_107579558.1 type I toxin-antitoxin system Fst family toxin -
  ISP08_RS12455 (ISP08_12445) - 2500554..2501054 (-) 501 WP_196931168.1 stage II sporulation protein M -
  ISP08_RS12460 (ISP08_12450) - 2501232..2501411 (-) 180 WP_195718853.1 hypothetical protein -
  ISP08_RS12465 (ISP08_12455) - 2501966..2502181 (+) 216 WP_195718854.1 hypothetical protein -
  ISP08_RS12470 (ISP08_12460) rpsR 2502369..2502611 (-) 243 WP_048793676.1 30S ribosomal protein S18 -
  ISP08_RS12475 (ISP08_12465) ssbA 2502712..2503224 (-) 513 WP_048793677.1 single-stranded DNA-binding protein Machinery gene
  ISP08_RS12480 (ISP08_12470) rpsF 2503239..2503544 (-) 306 WP_048793678.1 30S ribosomal protein S6 -
  ISP08_RS12485 (ISP08_12475) - 2503872..2504657 (+) 786 WP_195718855.1 GH25 family lysozyme -
  ISP08_RS12490 (ISP08_12480) - 2504698..2505540 (-) 843 WP_195718856.1 hypothetical protein -
  ISP08_RS12495 (ISP08_12485) - 2505553..2505879 (-) 327 WP_195718857.1 hypothetical protein -
  ISP08_RS12500 (ISP08_12490) ychF 2506088..2507185 (-) 1098 WP_195718858.1 redox-regulated ATPase YchF -
  ISP08_RS12505 (ISP08_12495) - 2507185..2507400 (-) 216 WP_048793683.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18851.36 Da        Isoelectric Point: 4.7305

>NTDB_id=498858 ISP08_RS12475 WP_048793677.1 2502712..2503224(-) (ssbA) [Staphylococcus lloydii strain 23_2_7_LY]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNNQRQNQSGGNDFQDYGQSFGGQQSGQNTSRNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=498858 ISP08_RS12475 WP_048793677.1 2502712..2503224(-) (ssbA) [Staphylococcus lloydii strain 23_2_7_LY]
ATGATAAACAGAGTTGTTTTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAACAACACCCTCAGGCGTGAGCGTTGC
GACGTTTACCTTAGCGGTGAATCGTACGTTTACCAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGCGTCGTTT
TTAGAAAACAAGCAGAAAATGTTAATAACTACTTATCAAAAGGTAGTTTAGCTGGCGTTGACGGTCGCTTACAATCACGT
AGCTATGAAAACCAAGAAGGACGTCGTATTTTTGTTACAGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
CCAAAACAACCAACGCCAAAACCAATCTGGAGGCAACGACTTCCAAGATTACGGTCAAAGCTTTGGTGGTCAACAATCTG
GACAAAACACGTCACGTAATAACAACAATTCATCAAACAATAATCAATCAGACAACCCATTCGCTAATGCGAACGGCCCT
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1AZR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.665
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376