Detailed information NTG0498644

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H9J98_RS03140
• Genome accession: NZ_CP064041
• Coordinates: 648250..649119 (-)
• Length: 289 a.a.
• NCBI ID: WP_176296457.1
• Uniprot ID: A0A9Q3YKG6
• Organism: Vibrio parahaemolyticus strain XMO116
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 643250..654119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9J98_RS03105 (H9J98_03100)	rpsP	644318..644566 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
H9J98_RS03110 (H9J98_03105)	rimM	644595..645143 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
H9J98_RS03115 (H9J98_03110)	trmD	645171..645914 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
H9J98_RS03120 (H9J98_03115)	rplS	645956..646309 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
H9J98_RS03125 (H9J98_03120)	yacG	646604..646798 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
H9J98_RS03130 (H9J98_03125)	zapD	646867..647607 (-)	741	WP_023624252.1	cell division protein ZapD	-
H9J98_RS03135 (H9J98_03130)	coaE	647635..648249 (-)	615	WP_025631392.1	dephospho-CoA kinase	-
H9J98_RS03140 (H9J98_03135)	pilD	648250..649119 (-)	870	WP_176296457.1	A24 family peptidase	Machinery gene
H9J98_RS03145 (H9J98_03140)	pilC	649184..650407 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
H9J98_RS03150 (H9J98_03145)	pilB	650433..652118 (-)	1686	WP_176296458.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H9J98_RS03155 (H9J98_03150)	pilA	652119..652571 (-)	453	WP_024702454.1	pilin	Machinery gene
H9J98_RS03160 (H9J98_03155)	nadC	652834..653721 (-)	888	WP_228085838.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32406.47 Da
• Isoelectric Point: 6.8209

>NTDB_id=498644 H9J98_RS03140 WP_176296457.1 648250..649119(-) (pilD) [Vibrio parahaemolyticus strain XMO116]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQDCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=498644 H9J98_RS03140 WP_176296457.1 648250..649119(-) (pilD) [Vibrio parahaemolyticus strain XMO116]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAGACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGCCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45