Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H9J98_RS01940 Genome accession   NZ_CP064041
Coordinates   412997..413641 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain XMO116     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 407997..418641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS01930 (H9J98_01930) uvrA 408907..411729 (-) 2823 WP_222133778.1 excinuclease ABC subunit UvrA -
  H9J98_RS01935 (H9J98_01935) galU 411867..412739 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H9J98_RS01940 (H9J98_01940) qstR 412997..413641 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  H9J98_RS01945 (H9J98_01945) ssb 413920..414450 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  H9J98_RS01950 (H9J98_01950) csrD 414691..416700 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  H9J98_RS01955 (H9J98_01955) - 416712..418157 (+) 1446 WP_020841337.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=498635 H9J98_RS01940 WP_005480993.1 412997..413641(-) (qstR) [Vibrio parahaemolyticus strain XMO116]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=498635 H9J98_RS01940 WP_005480993.1 412997..413641(-) (qstR) [Vibrio parahaemolyticus strain XMO116]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523