Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   H9K44_RS03180 Genome accession   NZ_CP064035
Coordinates   657243..657857 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 639553..657115 657243..657857 flank 128


Gene organization within MGE regions


Location: 639553..657857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS03095 (H9K44_03100) rpsP 639553..639801 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  H9K44_RS03100 (H9K44_03105) rimM 639830..640378 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  H9K44_RS03105 (H9K44_03110) trmD 640406..641149 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H9K44_RS03110 (H9K44_03115) rplS 641191..641544 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  H9K44_RS03115 (H9K44_03120) yacG 641867..642061 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  H9K44_RS03120 (H9K44_03125) zapD 642130..642870 (-) 741 WP_023624252.1 cell division protein ZapD -
  H9K44_RS03125 (H9K44_03130) coaE 642898..643512 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  H9K44_RS03130 (H9K44_03135) pilD 643513..644382 (-) 870 WP_169608825.1 A24 family peptidase Machinery gene
  H9K44_RS03135 (H9K44_03140) pilC 644447..645670 (-) 1224 WP_005479682.1 type II secretion system F family protein Machinery gene
  H9K44_RS03140 (H9K44_03145) pilB 645694..647379 (-) 1686 WP_169608822.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H9K44_RS03145 (H9K44_03150) - 647376..647834 (-) 459 WP_169608820.1 pilin -
  H9K44_RS03150 (H9K44_03155) nadC 648097..648984 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  H9K44_RS03155 (H9K44_03160) ampD 649077..649628 (+) 552 WP_020841256.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  H9K44_RS03160 (H9K44_03165) pdhR 650034..650801 (+) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  H9K44_RS03165 (H9K44_03170) aceE 650850..653513 (+) 2664 WP_005462566.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type -
  H9K44_RS03170 (H9K44_03175) aceF 653533..655419 (+) 1887 WP_031830968.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  H9K44_RS03175 (H9K44_03180) lpdA 655688..657115 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  H9K44_RS03180 (H9K44_03185) opaR 657243..657857 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=498603 H9K44_RS03180 WP_005479697.1 657243..657857(-) (opaR) [Vibrio parahaemolyticus strain DLM1799]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=498603 H9K44_RS03180 WP_005479697.1 657243..657857(-) (opaR) [Vibrio parahaemolyticus strain DLM1799]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAACTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTGAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701