Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H9K44_RS01960 Genome accession   NZ_CP064035
Coordinates   421296..421940 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 416296..426940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS01950 (H9K44_01955) uvrA 417206..420028 (-) 2823 WP_029852621.1 excinuclease ABC subunit UvrA -
  H9K44_RS01955 (H9K44_01960) galU 420166..421038 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H9K44_RS01960 (H9K44_01965) qstR 421296..421940 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  H9K44_RS01965 (H9K44_01970) ssb 422219..422749 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  H9K44_RS01970 (H9K44_01975) csrD 422990..424999 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  H9K44_RS01975 (H9K44_01980) - 425011..426456 (+) 1446 WP_140253974.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=498591 H9K44_RS01960 WP_005480993.1 421296..421940(-) (qstR) [Vibrio parahaemolyticus strain DLM1799]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=498591 H9K44_RS01960 WP_005480993.1 421296..421940(-) (qstR) [Vibrio parahaemolyticus strain DLM1799]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGTGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523