Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IGI28_RS06400 Genome accession   NZ_CP075484
Coordinates   1222232..1222969 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NT1N25     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1217232..1227969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI28_RS06370 yfiL 1217390..1217755 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  IGI28_RS06375 aroF 1217965..1219035 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IGI28_RS06380 tyrA 1219046..1220167 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IGI28_RS06385 pheA 1220210..1221370 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  IGI28_RS06390 pheL 1221469..1221516 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IGI28_RS06395 raiA 1221620..1221961 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IGI28_RS06400 comL 1222232..1222969 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IGI28_RS06405 rluD 1223104..1224084 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IGI28_RS06410 yfiH 1224081..1224812 (+) 732 WP_023486560.1 purine nucleoside phosphorylase YfiH -
  IGI28_RS06415 clpC 1224942..1227515 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=498523 IGI28_RS06400 WP_000197686.1 1222232..1222969(-) (comL) [Escherichia coli strain NT1N25]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=498523 IGI28_RS06400 WP_000197686.1 1222232..1222969(-) (comL) [Escherichia coli strain NT1N25]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376