Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ISN74_RS03860 Genome accession   NZ_CP064030
Coordinates   958111..958512 (+) Length   133 a.a.
NCBI ID   WP_275411498.1    Uniprot ID   -
Organism   Dyella caseinilytica strain DHOB09     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 953111..963512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN74_RS03835 (ISN74_03830) ruvX 954031..954462 (-) 432 WP_188797551.1 Holliday junction resolvase RuvX -
  ISN74_RS03840 (ISN74_03835) - 954459..955034 (-) 576 WP_188797553.1 YqgE/AlgH family protein -
  ISN74_RS03845 (ISN74_03840) - 955188..955772 (+) 585 WP_203546697.1 flagellar basal body-associated protein FliL -
  ISN74_RS03850 (ISN74_03845) - 955840..956700 (-) 861 WP_188797555.1 TonB family protein -
  ISN74_RS03855 (ISN74_03850) gshB 956697..957659 (-) 963 WP_188797557.1 glutathione synthase -
  ISN74_RS03860 (ISN74_03855) pilG 958111..958512 (+) 402 WP_275411498.1 response regulator Regulator
  ISN74_RS03865 (ISN74_03860) - 958542..958913 (+) 372 WP_188799498.1 response regulator -
  ISN74_RS03870 (ISN74_03865) - 958921..959475 (+) 555 WP_188799499.1 chemotaxis protein CheW -
  ISN74_RS03875 (ISN74_03870) - 959585..961618 (+) 2034 WP_188797559.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14649.11 Da        Isoelectric Point: 9.1307

>NTDB_id=498524 ISN74_RS03860 WP_275411498.1 958111..958512(+) (pilG) [Dyella caseinilytica strain DHOB09]
MNLNVGTNGLAGLKVMVIDDSKTIRRTAETLLKKEGCDVLTAVDGFEALAKISDQKPSIIFVDIMMPRLDGYQTCALIKN
NPQFRATPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVTTV

Nucleotide


Download         Length: 402 bp        

>NTDB_id=498524 ISN74_RS03860 WP_275411498.1 958111..958512(+) (pilG) [Dyella caseinilytica strain DHOB09]
GTGAACTTGAACGTAGGTACGAACGGCTTGGCCGGTCTGAAGGTCATGGTTATTGATGACTCCAAGACCATCCGCCGCAC
GGCGGAAACCTTGCTTAAGAAGGAAGGCTGCGACGTGCTCACCGCCGTCGACGGCTTCGAAGCGCTGGCCAAGATCTCCG
ACCAGAAACCGTCGATCATCTTCGTGGACATCATGATGCCGCGACTCGACGGTTATCAGACGTGCGCGCTGATCAAGAAC
AATCCGCAATTCCGAGCGACGCCAGTGATCATGCTGAGCTCGAAAGACGGTTTGTTCGATAAGGCGCGTGGTCGCATTGT
CGGCGCCGAGCAATATCTCACCAAGCCGTTCACGCGCGATGAACTGCTGGGCGCCATCCACCGCCATGTCACTACGGTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.2

93.985

0.669
  vicR Streptococcus mutans UA159

41.88

87.97

0.368