Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ISN31_RS00495 Genome accession   NZ_CP064004
Coordinates   101755..103143 (-) Length   462 a.a.
NCBI ID   WP_060748005.1    Uniprot ID   A0A109HMN0
Organism   Xanthomonas translucens pv. translucens strain XtKm8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 96755..108143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN31_RS00470 (ISN31_00470) pilA/pilAI 98058..98489 (+) 432 WP_060744724.1 pilin Machinery gene
  ISN31_RS00475 (ISN31_00475) - 98574..98972 (-) 399 WP_196484464.1 hypothetical protein -
  ISN31_RS00480 (ISN31_00480) pilB 99235..100971 (+) 1737 WP_058363696.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN31_RS00485 (ISN31_00485) - 100999..101298 (-) 300 WP_237653908.1 addiction module antidote protein -
  ISN31_RS00490 (ISN31_00490) - 101295..101590 (-) 296 Protein_97 type II toxin-antitoxin system RelE/ParE family toxin -
  ISN31_RS00495 (ISN31_00495) pilR 101755..103143 (-) 1389 WP_060748005.1 sigma-54 dependent transcriptional regulator Regulator
  ISN31_RS00500 (ISN31_00500) - 103218..104831 (-) 1614 WP_060748006.1 ATP-binding protein -
  ISN31_RS00505 (ISN31_00505) sucC 105072..106235 (+) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  ISN31_RS00510 (ISN31_00510) sucD 106259..107131 (+) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  ISN31_RS20785 - 107303..107644 (+) 342 WP_230950629.1 hypothetical protein -
  ISN31_RS20790 - 107663..108055 (+) 393 WP_065898879.1 hypothetical protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49713.12 Da        Isoelectric Point: 6.7306

>NTDB_id=498488 ISN31_RS00495 WP_060748005.1 101755..103143(-) (pilR) [Xanthomonas translucens pv. translucens strain XtKm8]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDAQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=498488 ISN31_RS00495 WP_060748005.1 101755..103143(-) (pilR) [Xanthomonas translucens pv. translucens strain XtKm8]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTAGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGTGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTATATCCTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGACCGAAGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGCCCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTATATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGAATGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109HMN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472