Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ISN33_RS07425 Genome accession   NZ_CP064002
Coordinates   1717804..1719192 (-) Length   462 a.a.
NCBI ID   WP_058362147.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain XtKm33     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712804..1724192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN33_RS07400 (ISN33_07390) pilA/pilAI 1713827..1714249 (+) 423 WP_081320414.1 pilin Machinery gene
  ISN33_RS07405 (ISN33_07395) - 1714321..1714731 (+) 411 WP_081320415.1 pilin -
  ISN33_RS07410 (ISN33_07400) pilB 1715073..1716809 (+) 1737 WP_206710335.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN33_RS07415 (ISN33_07405) - 1716984..1717436 (-) 453 WP_230812364.1 Fic family protein -
  ISN33_RS07420 (ISN33_07410) - 1717433..1717615 (-) 183 WP_068873434.1 YhfG family protein -
  ISN33_RS07425 (ISN33_07415) pilR 1717804..1719192 (-) 1389 WP_058362147.1 sigma-54 dependent transcriptional regulator Regulator
  ISN33_RS07430 (ISN33_07420) - 1719267..1720880 (-) 1614 WP_058361135.1 ATP-binding protein -
  ISN33_RS07435 (ISN33_07425) sucC 1721121..1722284 (+) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  ISN33_RS07440 (ISN33_07430) sucD 1722308..1723180 (+) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49878.36 Da        Isoelectric Point: 6.7309

>NTDB_id=498459 ISN33_RS07425 WP_058362147.1 1717804..1719192(-) (pilR) [Xanthomonas translucens pv. translucens strain XtKm33]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNRERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSARPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYPFPGNVRELENILERALAMAEEDQISAADLHLPQPGNSARVAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=498459 ISN33_RS07425 WP_058362147.1 1717804..1719192(-) (pilR) [Xanthomonas translucens pv. translucens strain XtKm33]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACCGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGTTGGTCGCGCGCACCATCCATGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTAATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGCGCGCCCGGTGGGCGC
CTCGATCGAGGTACCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACCCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTTGAGCGCGCCCTGGCAATGGCCGAAG
AGGACCAGATCAGCGCCGCCGATCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGTCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.092

99.351

0.617
  pilR Acinetobacter baumannii strain A118

46.983

100

0.472