Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ISN34_RS17290 Genome accession   NZ_CP064001
Coordinates   4004979..4006367 (+) Length   462 a.a.
NCBI ID   WP_206710787.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain XtKm34     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3999979..4011367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN34_RS20515 - 4000067..4000459 (-) 393 WP_065898879.1 hypothetical protein -
  ISN34_RS20520 - 4000478..4000819 (-) 342 WP_230950629.1 hypothetical protein -
  ISN34_RS17275 (ISN34_17255) sucD 4000991..4001863 (-) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  ISN34_RS17280 (ISN34_17260) sucC 4001887..4003050 (-) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  ISN34_RS17285 (ISN34_17265) - 4003291..4004904 (+) 1614 WP_060748006.1 ATP-binding protein -
  ISN34_RS17290 (ISN34_17270) pilR 4004979..4006367 (+) 1389 WP_206710787.1 sigma-54 dependent transcriptional regulator Regulator
  ISN34_RS17295 (ISN34_17275) - 4006532..4006827 (+) 296 Protein_3429 type II toxin-antitoxin system RelE/ParE family toxin -
  ISN34_RS17300 (ISN34_17280) - 4006824..4007123 (+) 300 WP_237653908.1 addiction module antidote protein -
  ISN34_RS17305 (ISN34_17285) pilB 4007151..4008887 (-) 1737 WP_058363696.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN34_RS17310 (ISN34_17290) - 4009150..4009548 (+) 399 WP_196484464.1 hypothetical protein -
  ISN34_RS17315 (ISN34_17295) pilA/pilAI 4009633..4010064 (-) 432 WP_060744724.1 pilin Machinery gene

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49743.15 Da        Isoelectric Point: 6.7306

>NTDB_id=498448 ISN34_RS17290 WP_206710787.1 4004979..4006367(+) (pilR) [Xanthomonas translucens pv. translucens strain XtKm34]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDAQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=498448 ISN34_RS17290 WP_206710787.1 4004979..4006367(+) (pilR) [Xanthomonas translucens pv. translucens strain XtKm34]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTAGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGTGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTATATCCTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGACCGAAGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGCCCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCA
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGAATGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

47.3

100

0.474