Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   SSUD12_RS09125 Genome accession   NC_017621
Coordinates   1826591..1828381 (-) Length   596 a.a.
NCBI ID   WP_014638618.1    Uniprot ID   G7SIE1
Organism   Streptococcus suis D12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821591..1833381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS09100 (SSUD12_1836) - 1821911..1822276 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  SSUD12_RS09105 (SSUD12_1837) - 1822398..1823300 (-) 903 WP_002942329.1 ABC transporter permease -
  SSUD12_RS09110 (SSUD12_1838) opp4B 1823314..1824270 (-) 957 WP_014638615.1 oligopeptide ABC transporter permease -
  SSUD12_RS09115 (SSUD12_1839) - 1824272..1825213 (-) 942 WP_014638616.1 ATP-binding cassette domain-containing protein -
  SSUD12_RS09120 (SSUD12_1840) - 1825216..1826214 (-) 999 WP_014638617.1 ABC transporter ATP-binding protein -
  SSUD12_RS09125 (SSUD12_1841) oppA 1826591..1828381 (-) 1791 WP_014638618.1 oligopeptide ABC transporter substrate-binding protein Regulator
  SSUD12_RS09130 (SSUD12_1842) pbp3 1828594..1829835 (+) 1242 WP_014638620.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SSUD12_RS09135 (SSUD12_1845) sufB 1830414..1831829 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  SSUD12_RS09140 (SSUD12_1847) sufU 1832010..1832450 (-) 441 WP_014638623.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65595.53 Da        Isoelectric Point: 4.5891

>NTDB_id=49802 SSUD12_RS09125 WP_014638618.1 1826591..1828381(-) (oppA) [Streptococcus suis D12]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISLFGFDGNRKLDDSGLAKAEFDVAGKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKKASNLNIVGSLDSAYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=49802 SSUD12_RS09125 WP_014638618.1 1826591..1828381(-) (oppA) [Streptococcus suis D12]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAGGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGTTTTGTTGATATCTCACTGTTCGGTTTCGATGGAAATCGTAAGTTAGATGATTCAGGTCTTGCTAAAGCTGA
ATTTGATGTAGCAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGCCCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATTACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGACATGC
CAGTAGATCAGTTGGATTCATATAAAAAAGCATCTAACTTGAATATTGTTGGTTCTTTGGACTCGGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAAGCAGCCGGTAAGAACGTTATGGACGAAAATGCCAAGATGAATGATGTGAAGCT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCCCGTAAACGTACTGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGACCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCTGATGAAAACACTAAGTTATTGGAAGCAATTAGTTCGACAGAATCATTTGACGACAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(109-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

95.638

100

0.956

Multiple sequence alignment