Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HK86_RS04530 Genome accession   NC_021847
Coordinates   950913..951641 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus O1:Kuk str. FDA_R31     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 945913..956641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK86_RS04505 (M634_04640) trpR 946300..946611 (+) 312 WP_005497218.1 trp operon repressor -
  HK86_RS04510 (M634_04645) yjjX 946660..947193 (-) 534 WP_021451172.1 inosine/xanthosine triphosphatase -
  HK86_RS04515 (M634_04650) pheA 947218..948396 (-) 1179 WP_005468591.1 prephenate dehydratase -
  HK86_RS04520 (M634_04655) hpf 948640..948966 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HK86_RS04525 (M634_04660) - 949297..950778 (-) 1482 WP_320207091.1 lytic transglycosylase F -
  HK86_RS04530 (M634_04665) comL 950913..951641 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  HK86_RS04535 (M634_04670) rluD 951778..952755 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HK86_RS04540 (M634_04675) pgeF 952757..953485 (+) 729 WP_020840119.1 peptidoglycan editing factor PgeF -
  HK86_RS04545 (M634_04680) clpC 953633..956206 (+) 2574 WP_020840120.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=49801 HK86_RS04530 WP_005460312.1 950913..951641(-) (comL) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=49801 HK86_RS04530 WP_005460312.1 950913..951641(-) (comL) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCGTGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment