Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SSUD12_RS09065 Genome accession   NC_017621
Coordinates   1816019..1816753 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis D12     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811019..1821753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS09035 (SSUD12_1822) rnpM 1811207..1811503 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  SSUD12_RS09040 (SSUD12_1823) nusA 1811520..1812662 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  SSUD12_RS09045 (SSUD12_1824) rimP 1812735..1813205 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  SSUD12_RS09050 (SSUD12_1825) trmB 1813503..1814141 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SSUD12_RS09055 (SSUD12_1826) ccrZ 1814138..1814932 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  SSUD12_RS09060 (SSUD12_1827) - 1814982..1816022 (-) 1041 WP_014638607.1 ABC transporter permease -
  SSUD12_RS09065 (SSUD12_1828) pptA 1816019..1816753 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  SSUD12_RS09070 (SSUD12_1829) - 1816816..1817229 (+) 414 WP_014638608.1 HIT family protein -
  SSUD12_RS09075 (SSUD12_1830) - 1817231..1817533 (+) 303 WP_014638609.1 hypothetical protein -
  SSUD12_RS09080 (SSUD12_1832) - 1818001..1819194 (-) 1194 WP_014638611.1 LCP family protein -
  SSUD12_RS09085 (SSUD12_1833) - 1819191..1819718 (-) 528 WP_014638612.1 GNAT family N-acetyltransferase -
  SSUD12_RS09090 (SSUD12_1834) tsaE 1819711..1820151 (-) 441 WP_024383566.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=49801 SSUD12_RS09065 WP_002942356.1 1816019..1816753(-) (pptA) [Streptococcus suis D12]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=49801 SSUD12_RS09065 WP_002942356.1 1816019..1816753(-) (pptA) [Streptococcus suis D12]
ATGTTAGAAGTAAAAAATGTAACTGGAGGGTATGTCAATATCCCGGTTTTAAAAGATGTATCTTTTACGGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGTTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTATTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGGACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment