Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SSUD9_RS08880 Genome accession   NC_017620
Coordinates   1810601..1811095 (-) Length   164 a.a.
NCBI ID   WP_014637153.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1805601..1816095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS08865 (SSUD9_1834) - 1808376..1809320 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  SSUD9_RS08870 (SSUD9_1835) - 1809336..1809992 (+) 657 WP_002939249.1 DUF1129 domain-containing protein -
  SSUD9_RS08875 (SSUD9_1836) rpsR 1810329..1810568 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  SSUD9_RS08880 (SSUD9_1837) ssbA 1810601..1811095 (-) 495 WP_014637153.1 single-stranded DNA-binding protein Machinery gene
  SSUD9_RS08885 (SSUD9_1838) rpsF 1811107..1811397 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  SSUD9_RS08890 (SSUD9_1839) - 1811569..1812558 (-) 990 WP_013730534.1 lipoate--protein ligase -
  SSUD9_RS08895 (SSUD9_1840) - 1812642..1814081 (-) 1440 WP_002937719.1 6-phospho-beta-glucosidase -
  SSUD9_RS08900 (SSUD9_1841) - 1814078..1814695 (-) 618 WP_002937720.1 histidine phosphatase family protein -
  SSUD9_RS08905 (SSUD9_1842) - 1814707..1815309 (-) 603 WP_002937724.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18101.92 Da        Isoelectric Point: 5.2281

>NTDB_id=49749 SSUD9_RS08880 WP_014637153.1 1810601..1811095(-) (ssbA) [Streptococcus suis D9]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFARKESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=49749 SSUD9_RS08880 WP_014637153.1 1810601..1811095(-) (ssbA) [Streptococcus suis D9]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGATAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAAAAGAGAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment