Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KIP81_RS08415 Genome accession   NZ_CP075172
Coordinates   1688389..1688895 (-) Length   168 a.a.
NCBI ID   WP_024343575.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1683389..1693895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS08400 (KIP81_08390) - 1686052..1686996 (+) 945 WP_243602799.1 magnesium transporter CorA family protein -
  KIP81_RS08405 (KIP81_08395) - 1687324..1687980 (+) 657 WP_243602800.1 DUF1129 family protein -
  KIP81_RS08410 (KIP81_08400) rpsR 1688090..1688329 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  KIP81_RS08415 (KIP81_08405) ssbA 1688389..1688895 (-) 507 WP_024343575.1 single-stranded DNA-binding protein Machinery gene
  KIP81_RS08420 (KIP81_08410) rpsF 1688907..1689197 (-) 291 WP_004233201.1 30S ribosomal protein S6 -
  KIP81_RS08425 (KIP81_08415) - 1689405..1689569 (-) 165 WP_021143095.1 hypothetical protein -
  KIP81_RS08430 (KIP81_08420) - 1689743..1690645 (-) 903 WP_162138316.1 class C sortase -
  KIP81_RS08435 (KIP81_08425) - 1690778..1692181 (-) 1404 WP_243602801.1 SpaA isopeptide-forming pilin-related protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18570.24 Da        Isoelectric Point: 4.9008

>NTDB_id=497437 KIP81_RS08415 WP_024343575.1 1688389..1688895(-) (ssbA) [Streptococcus equinus strain SheepZ001]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADSFQILESRATREGQSGGSYNGGFNNNSSFGGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=497437 KIP81_RS08415 WP_024343575.1 1688389..1688895(-) (ssbA) [Streptococcus equinus strain SheepZ001]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAACCAAAATGGTGAACGTGAGGCTGATTTTATTAACTGTGTGATTT
GGCGTCAGCAAGCTGAAAACTTAGCTAACTGGGCTAAAAAAGGTACATTGATTGGTGTTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGTCAGCGCGTTTACGTAACTGAGATTGTTGCAGATAGCTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGACAATCTGGTGGTTCTTACAATGGTGGATTCAATAACAATTCATCATTTGGCGGATCTTCAAACGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAATTTCGGTCGTGACGAAAGCCCATTTGGTAACTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.659

100

0.625
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.607
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

64.881

0.363