Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   L897_RS06595 Genome accession   NC_021807
Coordinates   1305814..1306422 (+) Length   202 a.a.
NCBI ID   WP_020837543.1    Uniprot ID   -
Organism   Streptococcus pyogenes HSC5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1300814..1311422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L897_RS06570 (L897_06755) - 1301063..1301545 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  L897_RS06575 (L897_06760) - 1301691..1303160 (-) 1470 WP_014635624.1 cell division site-positioning protein MapZ family protein -
  L897_RS06580 (L897_06765) - 1303174..1304328 (-) 1155 WP_011888664.1 class I SAM-dependent RNA methyltransferase -
  L897_RS06585 (L897_06775) gpsB 1304773..1305099 (-) 327 WP_002983626.1 cell division regulator GpsB -
  L897_RS06590 (L897_06780) - 1305218..1305733 (-) 516 WP_002994217.1 DUF1273 domain-containing protein -
  L897_RS06595 (L897_06785) recU 1305814..1306422 (+) 609 WP_020837543.1 Holliday junction resolvase RecU Machinery gene
  L897_RS06600 (L897_06790) pbp1a 1306409..1308583 (+) 2175 WP_020837545.1 penicillin-binding protein PBP1A -
  L897_RS06605 (L897_06795) pepC 1309050..1310387 (-) 1338 WP_011054844.1 aminopeptidase C -
  L897_RS06610 (L897_06800) nadE 1310572..1311396 (-) 825 WP_011054845.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23347.92 Da        Isoelectric Point: 9.8725

>NTDB_id=49700 L897_RS06595 WP_020837543.1 1305814..1306422(+) (recU) [Streptococcus pyogenes HSC5]
MVNYPQNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=49700 L897_RS06595 WP_020837543.1 1305814..1306422(+) (recU) [Streptococcus pyogenes HSC5]
ATGGTTAATTATCCTCAAAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAGCGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5

Multiple sequence alignment