Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IM733_RS01540 Genome accession   NZ_CP063832
Coordinates   336243..338444 (+) Length   733 a.a.
NCBI ID   WP_248919245.1    Uniprot ID   -
Organism   Pseudomonas entomophila strain 23S     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331243..343444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM733_RS01520 - 333110..333733 (+) 624 WP_248919242.1 glutathione S-transferase -
  IM733_RS01525 - 333866..334798 (+) 933 WP_248919243.1 ABC transporter ATP-binding protein -
  IM733_RS01530 - 334795..335574 (+) 780 WP_011532869.1 ABC transporter permease -
  IM733_RS01535 - 335458..336099 (-) 642 WP_248919244.1 DUF2062 domain-containing protein -
  IM733_RS01540 comA 336243..338444 (+) 2202 WP_248919245.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IM733_RS01545 exbB 338593..339228 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IM733_RS01550 - 339225..339659 (+) 435 WP_248919246.1 biopolymer transporter ExbD -
  IM733_RS01555 lpxK 339659..340669 (+) 1011 WP_248919247.1 tetraacyldisaccharide 4'-kinase -
  IM733_RS01560 - 340703..340888 (+) 186 WP_011532874.1 Trm112 family protein -
  IM733_RS01565 kdsB 340885..341649 (+) 765 WP_248919248.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IM733_RS01570 - 341649..342113 (+) 465 WP_248919249.1 low molecular weight protein-tyrosine-phosphatase -
  IM733_RS01575 murB 342110..343129 (+) 1020 WP_248919250.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 79310.08 Da        Isoelectric Point: 10.2135

>NTDB_id=496978 IM733_RS01540 WP_248919245.1 336243..338444(+) (comA) [Pseudomonas entomophila strain 23S]
MRTGMLALVLGLLCLRFLPGLPSVGWLLVLLIVALVCLPTRLWLLGCFVLGVCHAGWSAQRALDDRLAAELDGRTLWLEG
RVVGLPARGQRSVRFELEQPRSRRAQLPQRVQLSWFEGPALRAGERWRLAVNLRQPSGLLNPHGPDREAMLLARRVGATG
TVKAGERLGEAAVDWRDGLRQHLLAVEAHGREAALAALVLGDGAGLARQDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGGWPQRWPWLPWACGLAMAAALAYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAATPLLLALLGVLLVEPL
ASLLPGFWLSFAAVAVLVLCFSARLGAWRPWQAWTRAQWVIAVGLLPVLLALGLPVSLTAPLANLLAVPWISLGVLPLAL
LGAVLLPVPGVGEGMLWLAGLSLDGLFALLALVAAQQPPWMPEPLPLWAWLLVCLGAILMLLPRGVPLRTPGAVMLLAIW
VPREQVPHGQVDVWQLDVGQGLAVLLRTRHHNLLYDAGPARGDSDLGESVVLPALRKLGVNKLDAMLISHGHADHAGGAA
AVRNGLPVNRVLAGEVAGLDGAQLCDSGERWQWDGVAFSLWHWPQGRSSNERSCVLLVEANGERLLLAGDMEGGAERAWL
AAHDEHRVDWLQAPHHGSRTSSTEPFIQATAPRGVMISRGRHNGFGHPHPQVIERYRRHGVTVHDTAIEGALRLQLGSHG
GVEGMRGQRRFWR

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=496978 IM733_RS01540 WP_248919245.1 336243..338444(+) (comA) [Pseudomonas entomophila strain 23S]
ATGCGCACAGGGATGCTCGCGCTGGTGCTCGGGCTTTTGTGCCTGCGCTTCCTGCCTGGTCTGCCATCGGTCGGATGGCT
GTTGGTCCTGTTGATAGTTGCCTTGGTCTGCCTGCCTACACGCTTGTGGTTGCTCGGGTGTTTCGTGCTGGGTGTCTGTC
ATGCGGGCTGGTCGGCGCAGCGGGCCTTGGATGATCGTTTGGCCGCCGAACTGGATGGCCGGACGTTGTGGCTGGAGGGG
AGGGTGGTGGGTTTGCCCGCCCGTGGCCAACGCAGCGTGCGTTTCGAGCTGGAACAGCCTAGGTCGCGCCGGGCGCAGTT
GCCGCAACGTGTGCAGTTGAGCTGGTTCGAAGGGCCAGCGTTGCGAGCGGGCGAGCGCTGGCGGCTGGCAGTCAACCTGC
GGCAACCCAGTGGGTTGCTCAACCCCCATGGGCCAGATCGCGAGGCCATGCTTCTGGCGCGGCGAGTCGGCGCAACAGGC
ACTGTCAAGGCGGGTGAACGGCTTGGCGAGGCAGCGGTCGACTGGCGCGATGGCCTGCGTCAACACTTGCTGGCAGTGGA
GGCTCATGGGCGCGAGGCGGCCCTTGCGGCCCTGGTGCTGGGCGATGGCGCGGGGCTGGCGCGGCAGGACTGGCAGGTCT
TGCAGGCTACCGGCACGGTGCACCTGCTGGTCATCTCTGGGCAGCACATCGGGTTGCTGGCCGGGCTGGTGTATGGCCTG
GTGGCAGGATTGGCGAGACTTGGCGGGTGGCCACAGCGGTGGCCATGGCTGCCGTGGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTATGGCTGGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCCTGTCTGATGCTAGCGGTGGTGTTGCTCT
GGCGCCTGCGCTTCCGCCATTTGGGCGCCGCCACGCCGCTGCTGCTGGCGCTGCTCGGTGTGCTGCTGGTCGAACCGCTG
GCGAGCTTGCTGCCGGGGTTCTGGCTGTCGTTCGCCGCCGTTGCCGTGCTGGTGCTGTGTTTTTCCGCTCGGCTGGGCGC
GTGGCGCCCCTGGCAGGCCTGGACCCGCGCCCAGTGGGTGATTGCCGTGGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGGTCAGCCTGACGGCACCGCTGGCCAATCTGCTGGCGGTGCCGTGGATCAGCCTGGGGGTGTTGCCGCTGGCATTG
CTGGGGGCGGTGCTGTTGCCGGTGCCGGGTGTGGGGGAGGGGATGTTGTGGTTGGCAGGCCTGTCGCTGGATGGTCTGTT
TGCATTGTTGGCGCTCGTTGCGGCGCAGCAGCCTCCCTGGATGCCTGAGCCATTGCCCCTGTGGGCCTGGCTGCTGGTGT
GCCTGGGGGCGATTCTGATGCTGTTGCCTCGGGGTGTGCCGCTGCGCACGCCGGGCGCGGTCATGCTGCTGGCGATCTGG
GTGCCGCGAGAGCAGGTGCCCCATGGGCAGGTGGACGTCTGGCAACTGGACGTCGGCCAGGGGTTGGCGGTGTTGCTGCG
CACCCGTCATCACAACTTGCTGTATGACGCAGGGCCCGCGCGGGGCGATAGCGACCTGGGCGAAAGCGTGGTATTGCCTG
CCTTGCGCAAACTCGGGGTGAACAAACTGGATGCGATGCTGATCAGTCATGGTCATGCCGATCATGCTGGTGGCGCGGCG
GCCGTCCGTAATGGGCTGCCTGTGAACCGGGTGCTGGCGGGAGAGGTCGCCGGCCTGGATGGGGCGCAACTCTGTGACAG
TGGCGAGCGCTGGCAGTGGGATGGCGTGGCGTTTTCGCTTTGGCATTGGCCGCAAGGCCGGTCCAGCAACGAGCGCTCCT
GTGTGTTGCTGGTGGAGGCCAATGGCGAACGCTTGCTGCTGGCCGGCGATATGGAAGGTGGTGCGGAACGGGCCTGGCTG
GCGGCCCATGACGAGCATCGAGTCGACTGGCTGCAGGCGCCGCACCATGGCAGTCGTACGTCGTCCACCGAGCCGTTCAT
CCAGGCCACCGCGCCGCGTGGGGTAATGATTTCCCGTGGGCGGCACAATGGATTCGGGCATCCTCATCCGCAGGTGATCG
AGCGGTATCGGCGGCATGGGGTGACGGTGCATGACACGGCCATCGAGGGGGCGCTGCGGTTGCAGCTGGGCAGCCATGGT
GGGGTTGAGGGTATGCGTGGACAACGCAGGTTCTGGCGGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.944

98.09

0.588
  comA Ralstonia pseudosolanacearum GMI1000

35.369

100

0.379