Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IM733_RS01545 Genome accession   NZ_CP063832
Coordinates   338593..339228 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas entomophila strain 23S     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333593..344228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM733_RS01525 - 333866..334798 (+) 933 WP_248919243.1 ABC transporter ATP-binding protein -
  IM733_RS01530 - 334795..335574 (+) 780 WP_011532869.1 ABC transporter permease -
  IM733_RS01535 - 335458..336099 (-) 642 WP_248919244.1 DUF2062 domain-containing protein -
  IM733_RS01540 comA 336243..338444 (+) 2202 WP_248919245.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IM733_RS01545 exbB 338593..339228 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IM733_RS01550 - 339225..339659 (+) 435 WP_248919246.1 biopolymer transporter ExbD -
  IM733_RS01555 lpxK 339659..340669 (+) 1011 WP_248919247.1 tetraacyldisaccharide 4'-kinase -
  IM733_RS01560 - 340703..340888 (+) 186 WP_011532874.1 Trm112 family protein -
  IM733_RS01565 kdsB 340885..341649 (+) 765 WP_248919248.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IM733_RS01570 - 341649..342113 (+) 465 WP_248919249.1 low molecular weight protein-tyrosine-phosphatase -
  IM733_RS01575 murB 342110..343129 (+) 1020 WP_248919250.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=496979 IM733_RS01545 WP_028690976.1 338593..339228(+) (exbB) [Pseudomonas entomophila strain 23S]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=496979 IM733_RS01545 WP_028690976.1 338593..339228(+) (exbB) [Pseudomonas entomophila strain 23S]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCTTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAAATCCTGGCCGCCGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCGTCGCGGGTGATCCACGAGCTGGAGCGTTACAT
CAGTACCCTCGGCACTATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACCGTGCTGGGTATGATCGACATTTTCA
GCGCCTTCATGGGTTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGCGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCGGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCATCGCTTCCTGCTGCGCCGTATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCAATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829