Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IH404_RS17185 Genome accession   NZ_CP063780
Coordinates   3993010..3995235 (-) Length   741 a.a.
NCBI ID   WP_194438567.1    Uniprot ID   A0A7S7MQF9
Organism   Pseudomonas sp. OST1909     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3988010..4000235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IH404_RS17150 (IH404_17150) murB 3988381..3989400 (-) 1020 WP_005789043.1 UDP-N-acetylmuramate dehydrogenase -
  IH404_RS17155 (IH404_17155) - 3989397..3989861 (-) 465 WP_005789044.1 low molecular weight protein-tyrosine-phosphatase -
  IH404_RS17160 (IH404_17160) kdsB 3989861..3990625 (-) 765 WP_005789046.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IH404_RS17165 (IH404_17165) - 3990622..3990807 (-) 186 WP_003174668.1 Trm112 family protein -
  IH404_RS17170 (IH404_17170) lpxK 3990830..3991840 (-) 1011 WP_194438565.1 tetraacyldisaccharide 4'-kinase -
  IH404_RS17175 (IH404_17175) - 3991840..3992268 (-) 429 WP_005789054.1 biopolymer transporter ExbD -
  IH404_RS17180 (IH404_17180) exbB 3992265..3992900 (-) 636 WP_005789055.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IH404_RS17185 (IH404_17185) comA 3993010..3995235 (-) 2226 WP_194438567.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IH404_RS17190 (IH404_17190) - 3995371..3995886 (+) 516 WP_005789057.1 DUF2062 domain-containing protein -
  IH404_RS17195 (IH404_17195) - 3995890..3997248 (-) 1359 WP_194440687.1 sensor histidine kinase -
  IH404_RS17200 (IH404_17200) - 3997235..3997963 (-) 729 WP_005789059.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80275.37 Da        Isoelectric Point: 10.7308

>NTDB_id=496777 IH404_RS17185 WP_194438567.1 3993010..3995235(-) (comA) [Pseudomonas sp. OST1909]
MKTGMFALALGLLVLRWLPALPSGAGLLAMLILALMLLPFRTYPVAFFLVGLSWACISAQWALDDRLQPALDGQTRWVQG
RVIGLPQQTGTGVRFELADSRSRNARLPKRIRVSWHGGPTVNSGEYWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGASA
TVKDGERLAPARNAWRDAVRQRLMAVEAHGREAGLAALVLGDGSGLAPEDWQVLQNTGTVHLLVISGQHIGLLAGLIYGL
IAMLARYGCWPRGWPWLPWACGLAFAGALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNGVLLIEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWSVWQIWTRPQWLIAIGLFPVLLVLGLPISLSAPAANLFAVPWISLVVLPLAL
LGTALLWVPLVGEGVLWLAGGALDGLFKGLALLAAQLPAWVPAEVPLRYWLVSLAGAVIVLLPKGLPFRVLGWPMLLVAV
FPPRDGVPHGQMEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLQKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLATQPCRSGEHWKWDGVAFELWQWPGAIEGNPKSCVLQVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWAFLQRLAPTAVLISRGRGNAFGHPHPQVLKRYQALGSRVYDSAEQGAVRLRL
GAYTPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=496777 IH404_RS17185 WP_194438567.1 3993010..3995235(-) (comA) [Pseudomonas sp. OST1909]
ATGAAAACAGGGATGTTCGCGCTGGCGCTGGGGTTGCTGGTATTGCGCTGGTTACCCGCATTGCCGTCTGGCGCCGGGTT
GCTGGCCATGCTGATACTGGCCTTGATGCTGCTGCCTTTTCGCACCTATCCCGTGGCGTTTTTTCTGGTCGGCCTGAGTT
GGGCCTGCATCAGCGCACAGTGGGCGCTGGATGATCGATTGCAACCGGCGCTGGACGGGCAGACGCGCTGGGTACAAGGG
CGTGTCATCGGCTTGCCGCAGCAGACCGGCACGGGCGTGCGTTTCGAGTTGGCCGACAGTCGGTCGCGCAATGCACGGCT
GCCCAAACGTATCCGGGTGTCCTGGCACGGCGGGCCGACCGTAAACAGCGGCGAGTACTGGCGTCTGGCACTGACGCTCA
AGCGGCCCGCCGGCCTGCTCAATTTTCATGGCTTTGACCACGAAGCCTGGCTGCTGGCCCAGCGTATCGGCGCCAGCGCG
ACGGTGAAGGATGGTGAGCGCCTGGCGCCGGCGCGCAATGCCTGGCGTGATGCGGTTCGCCAGCGCCTGATGGCCGTGGA
AGCGCACGGCCGCGAGGCGGGCCTGGCGGCGTTGGTGCTGGGCGACGGTTCCGGGCTTGCACCTGAGGATTGGCAGGTGT
TGCAGAACACCGGCACGGTGCATCTGCTGGTGATTTCCGGACAGCACATTGGCTTGTTGGCGGGGTTGATCTACGGCTTG
ATCGCGATGTTGGCGCGCTATGGTTGCTGGCCGCGAGGCTGGCCATGGCTGCCATGGGCGTGCGGATTGGCGTTTGCCGG
GGCGTTGGGCTATGGCCTGCTGGCAGGGTTCGGCGTGCCGGTGCAGCGGGCTTGTGTGATGGTGGGCCTGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGGGTGTGGTGGCCGTTGTTGCTGGCGTTGAATGGCGTGTTGCTCATCGAACCCCTG
GCCAGTCTACAGCCGGGGTTCTGGTTGTCGTTTGCGGCGGTCGCGGTGTTGGTGCTGGCATTCAGCGGGCGCCTGGGGCC
GTGGAGCGTCTGGCAAATCTGGACCCGTCCCCAGTGGTTGATCGCAATTGGCTTGTTTCCGGTCCTGCTGGTGTTGGGGT
TGCCCATCAGCCTTAGTGCCCCAGCGGCCAATCTGTTCGCCGTGCCCTGGATCAGCCTGGTAGTACTGCCTTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGTCGGCGAGGGCGTGTTGTGGCTGGCCGGTGGCGCACTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTCGCTGCACAACTGCCGGCCTGGGTACCGGCTGAGGTGCCTTTGAGGTATTGGCTGGTGAGCC
TGGCGGGCGCAGTGATTGTGTTGTTGCCCAAGGGGCTGCCATTCCGAGTTCTGGGTTGGCCCATGCTATTGGTGGCAGTG
TTTCCACCCAGAGATGGGGTGCCCCATGGCCAGATGGAGGTGTTGCAACTGGATGTCGGCCAGGGCCAGGCACTGATCCT
GCGTACCCGCCATCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGATCTGGGCGCGCGCGTGGTCTTGC
CGTCGTTGCAGAAGCTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGCGGTGCC
GCGGCGGTGGCCCGTGGCCTGCCCGTCAAGCGTGTGGTGGGCGGTGAAACCGAAGGGCTGCCAGCGTTTCTCGCTACGCA
ACCCTGCAGGAGTGGTGAACATTGGAAGTGGGACGGCGTGGCATTCGAACTGTGGCAATGGCCTGGTGCTATCGAGGGCA
ATCCGAAATCCTGTGTATTGCAGGTCCAGGCCAACGGCGAACGCCTGCTGCTCACCGGTGATATCGATCGCGCCGCCGAG
CAAGCATTTCTGGCCTCGCCGCTGGCGGTTCCGACCGACTGGCTGCAAGCCCCGCACCATGGCAGCCGTAGTTCTTCGTC
CTGGGCTTTCCTGCAGCGGCTGGCGCCAACCGCGGTGCTGATTTCCCGGGGGCGCGGCAACGCGTTCGGCCATCCGCATC
CGCAGGTGCTGAAGCGCTATCAGGCGCTGGGTAGCCGGGTATATGACAGTGCCGAGCAAGGCGCTGTACGGCTGCGCCTG
GGGGCATACACGCCACCAACGGTTGCGCGCAGTCAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7MQF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.031

0.58
  comA Ralstonia pseudosolanacearum GMI1000

34.722

100

0.371