Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IH404_RS17180 Genome accession   NZ_CP063780
Coordinates   3992265..3992900 (-) Length   211 a.a.
NCBI ID   WP_005789055.1    Uniprot ID   A0A7S7MQG5
Organism   Pseudomonas sp. OST1909     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3987265..3997900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IH404_RS17145 (IH404_17145) - 3987640..3988311 (+) 672 WP_194438563.1 Bax inhibitor-1/YccA family protein -
  IH404_RS17150 (IH404_17150) murB 3988381..3989400 (-) 1020 WP_005789043.1 UDP-N-acetylmuramate dehydrogenase -
  IH404_RS17155 (IH404_17155) - 3989397..3989861 (-) 465 WP_005789044.1 low molecular weight protein-tyrosine-phosphatase -
  IH404_RS17160 (IH404_17160) kdsB 3989861..3990625 (-) 765 WP_005789046.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IH404_RS17165 (IH404_17165) - 3990622..3990807 (-) 186 WP_003174668.1 Trm112 family protein -
  IH404_RS17170 (IH404_17170) lpxK 3990830..3991840 (-) 1011 WP_194438565.1 tetraacyldisaccharide 4'-kinase -
  IH404_RS17175 (IH404_17175) - 3991840..3992268 (-) 429 WP_005789054.1 biopolymer transporter ExbD -
  IH404_RS17180 (IH404_17180) exbB 3992265..3992900 (-) 636 WP_005789055.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IH404_RS17185 (IH404_17185) comA 3993010..3995235 (-) 2226 WP_194438567.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IH404_RS17190 (IH404_17190) - 3995371..3995886 (+) 516 WP_005789057.1 DUF2062 domain-containing protein -
  IH404_RS17195 (IH404_17195) - 3995890..3997248 (-) 1359 WP_194440687.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22912.07 Da        Isoelectric Point: 7.3615

>NTDB_id=496776 IH404_RS17180 WP_005789055.1 3992265..3992900(-) (exbB) [Pseudomonas sp. OST1909]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=496776 IH404_RS17180 WP_005789055.1 3992265..3992900(-) (exbB) [Pseudomonas sp. OST1909]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCTGAACACCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AACAGCTCGACAAGCAAAAACTCAAGGAGCTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCGGCTGCCCGGGTTATCCATGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATTGCCGCCATGGCGCCGCTGCTCGGTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCAGTATTGGCCGGGGGGATTTCCAAGGCATTGATCACCACCGCC
GCCGGCCTGATGGTGGGGATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAGCGTCGCATCGACGAACTGGTGGTTGGCAT
GGAACAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGACGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7MQG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863