Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IOD65_RS16645 Genome accession   NZ_CP063769
Coordinates   3482909..3483313 (-) Length   134 a.a.
NCBI ID   WP_005066267.1    Uniprot ID   -
Organism   Acinetobacter sp. Ac-14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3477909..3488313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS16615 (IOD65_16615) - 3477993..3478262 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  IOD65_RS16620 (IOD65_16620) rapZ 3478259..3479110 (-) 852 WP_005066272.1 RNase adapter RapZ -
  IOD65_RS16625 (IOD65_16625) panC 3479134..3479982 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  IOD65_RS16630 (IOD65_16630) panB 3479986..3480795 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IOD65_RS16635 (IOD65_16635) folK 3480841..3481323 (-) 483 WP_002117282.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IOD65_RS16640 (IOD65_16640) pcnB 3481320..3482783 (-) 1464 WP_005066269.1 polynucleotide adenylyltransferase PcnB -
  IOD65_RS16645 (IOD65_16645) comEA 3482909..3483313 (-) 405 WP_005066267.1 ComEA family DNA-binding protein Machinery gene
  IOD65_RS16650 (IOD65_16650) mazG 3483282..3484088 (-) 807 WP_005066265.1 nucleoside triphosphate pyrophosphohydrolase -
  IOD65_RS16655 (IOD65_16655) - 3484201..3484974 (+) 774 WP_005066263.1 SDR family oxidoreductase -
  IOD65_RS16660 (IOD65_16660) - 3485021..3487327 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15454.70 Da        Isoelectric Point: 10.5869

>NTDB_id=496673 IOD65_RS16645 WP_005066267.1 3482909..3483313(-) (comEA) [Acinetobacter sp. Ac-14]
MQLSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRYDQKLSMQHSSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=496673 IOD65_RS16645 WP_005066267.1 3482909..3483313(-) (comEA) [Acinetobacter sp. Ac-14]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCAACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCACTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATACACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403