Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IOD65_RS13310 Genome accession   NZ_CP063769
Coordinates   2784541..2785248 (+) Length   235 a.a.
NCBI ID   WP_005070320.1    Uniprot ID   A0A009I7W0
Organism   Acinetobacter sp. Ac-14     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2779541..2790248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS13290 (IOD65_13290) - 2782351..2783160 (+) 810 WP_025469847.1 M23 family metallopeptidase -
  IOD65_RS13295 (IOD65_13295) - 2783157..2783583 (-) 427 Protein_2600 GNAT family N-acetyltransferase -
  IOD65_RS13300 (IOD65_13300) - 2783680..2784102 (-) 423 WP_005070319.1 OsmC family protein -
  IOD65_RS13305 (IOD65_13305) - 2784181..2784300 (-) 120 WP_002121587.1 hypothetical protein -
  IOD65_RS13310 (IOD65_13310) crp 2784541..2785248 (+) 708 WP_005070320.1 cAMP-activated global transcriptional regulator CRP Regulator
  IOD65_RS13315 (IOD65_13315) - 2785408..2786457 (+) 1050 WP_005070322.1 NADP(H)-dependent aldo-keto reductase -
  IOD65_RS13320 (IOD65_13320) - 2786513..2787292 (-) 780 WP_002121572.1 M48 family metallopeptidase -
  IOD65_RS13325 (IOD65_13325) - 2787408..2787724 (-) 317 Protein_2606 hypothetical protein -
  IOD65_RS13330 (IOD65_13330) - 2787847..2789166 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26526.09 Da        Isoelectric Point: 4.6573

>NTDB_id=496669 IOD65_RS13310 WP_005070320.1 2784541..2785248(+) (crp) [Acinetobacter sp. Ac-14]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=496669 IOD65_RS13310 WP_005070320.1 2784541..2785248(+) (crp) [Acinetobacter sp. Ac-14]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGACGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGAACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATACCCAGACTTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGCCGTATTGCACGTTGCTTAATCGAT
CTATCTTCTCAACCAGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCGCGTGAGATGGTTGGTCGTGTACTTAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCATCATTAGAAGAAAACACTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I7W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.447

100

0.974
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404