Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IOD65_RS02505 Genome accession   NZ_CP063769
Coordinates   526404..526931 (+) Length   175 a.a.
NCBI ID   WP_005067086.1    Uniprot ID   A0A009R948
Organism   Acinetobacter sp. Ac-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521404..531931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS02490 (IOD65_02490) pilM 523917..524975 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  IOD65_RS02495 (IOD65_02495) pilN 524975..525616 (+) 642 WP_005067080.1 PilN domain-containing protein Machinery gene
  IOD65_RS02500 (IOD65_02500) pilO 525613..526392 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  IOD65_RS02505 (IOD65_02505) pilP 526404..526931 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  IOD65_RS02510 (IOD65_02510) pilQ 526994..529120 (+) 2127 WP_005067089.1 type IV pilus secretin PilQ family protein Machinery gene
  IOD65_RS02515 (IOD65_02515) aroK 529132..529701 (+) 570 WP_002116987.1 shikimate kinase AroK -
  IOD65_RS02520 (IOD65_02520) aroB 529730..530812 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -
  IOD65_RS02525 (IOD65_02525) - 530829..531698 (+) 870 WP_005067097.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19262.43 Da        Isoelectric Point: 9.7301

>NTDB_id=496647 IOD65_RS02505 WP_005067086.1 526404..526931(+) (pilP) [Acinetobacter sp. Ac-14]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=496647 IOD65_RS02505 WP_005067086.1 526404..526931(+) (pilP) [Acinetobacter sp. Ac-14]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTGGTTTTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGAGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCATCAAATTGAGCGAGTACAGGTAGGGAATTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009R948

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

87.429

100

0.874
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714