Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IOD65_RS02495 Genome accession   NZ_CP063769
Coordinates   524975..525616 (+) Length   213 a.a.
NCBI ID   WP_005067080.1    Uniprot ID   -
Organism   Acinetobacter sp. Ac-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519975..530616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS02475 (IOD65_02475) - 519978..520310 (+) 333 WP_005067072.1 hypothetical protein -
  IOD65_RS02480 (IOD65_02480) - 520313..521137 (+) 825 WP_005067074.1 putative RNA methyltransferase -
  IOD65_RS02485 (IOD65_02485) ponA 521194..523755 (-) 2562 WP_005067076.1 penicillin-binding protein PBP1a -
  IOD65_RS02490 (IOD65_02490) pilM 523917..524975 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  IOD65_RS02495 (IOD65_02495) pilN 524975..525616 (+) 642 WP_005067080.1 PilN domain-containing protein Machinery gene
  IOD65_RS02500 (IOD65_02500) pilO 525613..526392 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  IOD65_RS02505 (IOD65_02505) pilP 526404..526931 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  IOD65_RS02510 (IOD65_02510) pilQ 526994..529120 (+) 2127 WP_005067089.1 type IV pilus secretin PilQ family protein Machinery gene
  IOD65_RS02515 (IOD65_02515) aroK 529132..529701 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23908.31 Da        Isoelectric Point: 5.1162

>NTDB_id=496645 IOD65_RS02495 WP_005067080.1 524975..525616(+) (pilN) [Acinetobacter sp. Ac-14]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLDDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=496645 IOD65_RS02495 WP_005067080.1 524975..525616(+) (pilN) [Acinetobacter sp. Ac-14]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAGATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCAGTCGTTGTGCGTTTGGTGGATGAATTAGTACG
TGTGACACCTGCTGCAATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAGTTATTACGTAATCTTGAAGCATCACCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.671

100

0.897
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681