Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   IOD65_RS02490 Genome accession   NZ_CP063769
Coordinates   523917..524975 (+) Length   352 a.a.
NCBI ID   WP_005067078.1    Uniprot ID   -
Organism   Acinetobacter sp. Ac-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518917..529975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS02475 (IOD65_02475) - 519978..520310 (+) 333 WP_005067072.1 hypothetical protein -
  IOD65_RS02480 (IOD65_02480) - 520313..521137 (+) 825 WP_005067074.1 putative RNA methyltransferase -
  IOD65_RS02485 (IOD65_02485) ponA 521194..523755 (-) 2562 WP_005067076.1 penicillin-binding protein PBP1a -
  IOD65_RS02490 (IOD65_02490) pilM 523917..524975 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  IOD65_RS02495 (IOD65_02495) pilN 524975..525616 (+) 642 WP_005067080.1 PilN domain-containing protein Machinery gene
  IOD65_RS02500 (IOD65_02500) pilO 525613..526392 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  IOD65_RS02505 (IOD65_02505) pilP 526404..526931 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  IOD65_RS02510 (IOD65_02510) pilQ 526994..529120 (+) 2127 WP_005067089.1 type IV pilus secretin PilQ family protein Machinery gene
  IOD65_RS02515 (IOD65_02515) aroK 529132..529701 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39068.65 Da        Isoelectric Point: 4.4657

>NTDB_id=496644 IOD65_RS02490 WP_005067078.1 523917..524975(+) (pilM) [Acinetobacter sp. Ac-14]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALTPLPENSVVEKNILNPEAVAEALERAMNLANPHTTNAAI
AVPTSTVIHKTIEMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLTPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEILEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=496644 IOD65_RS02490 WP_005067078.1 523917..524975(+) (pilM) [Acinetobacter sp. Ac-14]
GTGCTCAGGTTATATCGTAAACCGAATAAGGGGTTAATGGGCGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAATGGTAAATATTGGGTAGAAAGCTATGCTTTAACGCCTTTACCTGAGAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCAGAAGCAGTTGCAGAAGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCACACCACTAACGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACCATCGAAATGGATGCAGATATGAACGATGATGAACGTGAAGTTCAGAT
TCGATTAGATGCGGAGCAATATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAAGTTTTACCAGATCGACTGC
CGAATCCAAATCGTGTGAATGTACTTTTAGTCGCAACACGAACAGAAAATGTTGAAACACGCGTAGAAGTACTGGAACTG
GTTGATTTAACGCCTAAGCTTGCTGATGTTGAAAGTTATGCTGTCGAGCGTGCTTTTAGTGTGTTTGCTGATAGCTTACC
CATGGGTGCAAATACCATTGGTATTTTAGATATTGGCCATACCATGACCACATTATCGGTTATGCAAAATGGCAAAATCA
TTTATACCCGTGAACAAGTCTTTGGTGGCAAACAGCTTACTTTGGAAATTCAAAGCCGTTATGGTTTGTCATTAGAAGAA
GCGGGACGCGCTAAAAAAGAACGTTCTTTGCCAGATGATTATGACATCGAAATCTTAGAACCATTTTTAGATGCTGTAGT
TCAGCAAGCTGCTAGATCTCTACAATTTTTCTTCTCTTCATCCCAATTCAATGAAATTGACCATATTTTGCTAGCGGGTG
GCAATGCCAACATTCCAGGGCTTGCTAAATTGTTGCAGCAGAAACTCGGTTACCGAGTCACTATTGCCAATCCATTTTTA
CAAATGGGTTTCTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCTTCATTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

96.307

100

0.963
  comM Acinetobacter nosocomialis M2

96.307

100

0.963
  comM Acinetobacter baylyi ADP1

81.25

100

0.813
  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42