Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IM712_RS06265 Genome accession   NZ_CP063768
Coordinates   1258522..1258641 (-) Length   39 a.a.
NCBI ID   WP_069473622.1    Uniprot ID   -
Organism   Bacillus velezensis strain KMU01     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253522..1263641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS06230 speE 1253918..1254748 (+) 831 WP_003151052.1 spermidine synthase -
  IM712_RS06235 speB 1254808..1255680 (+) 873 WP_003151054.1 agmatinase -
  IM712_RS06240 - 1255850..1256068 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  IM712_RS06245 - 1256659..1257171 (-) 513 WP_077722993.1 stage II sporulation protein M -
  IM712_RS06250 - 1257215..1257496 (-) 282 WP_014306021.1 hypothetical protein -
  IM712_RS06255 - 1257903..1258106 (-) 204 WP_069473623.1 hypothetical protein -
  IM712_RS06260 - 1258120..1258323 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  IM712_RS06265 phrF 1258522..1258641 (-) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  IM712_RS06270 rapF 1258625..1259770 (-) 1146 WP_077722992.1 tetratricopeptide repeat protein Regulator
  IM712_RS06275 - 1260001..1261356 (+) 1356 WP_077722991.1 YncE family protein -
  IM712_RS06280 - 1261396..1262772 (+) 1377 WP_077722990.1 YncE family protein -
  IM712_RS06285 - 1262779..1263291 (-) 513 Protein_1188 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4282.10 Da        Isoelectric Point: 8.0195

>NTDB_id=496584 IM712_RS06265 WP_069473622.1 1258522..1258641(-) (phrF) [Bacillus velezensis strain KMU01]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEIAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=496584 IM712_RS06265 WP_069473622.1 1258522..1258641(-) (phrF) [Bacillus velezensis strain KMU01]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAATTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436